Evidence map›Paper›PMID 39812085›Full record

ArticleJournal of the American Chemical Society2025

Quantitative Proteomics Identifies Profilin-1 as a Pseudouridine-Binding Protein.

Songbo Wei, Xiaoxia Dai, Jun Yuan, Shiyang He, Kriti Shah, Shiyuan Guo, Zheng Duan, Jernej Murn, Yinsheng Wang

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Pseudouridine selects RNAs for extracellular transport.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Songbo WeiDepartment of Chemistry, University of California, Riverside, California 92521-0403, United States.
Xiaoxia DaiDepartment of Chemistry, University of California, Riverside, California 92521-0403, United States.ORCID 0000-0002-3514-5061
Jun YuanDepartment of Chemistry, University of California, Riverside, California 92521-0403, United States.
Shiyang HeDepartment of Biochemistry, University of California, Riverside, California 92521-0403, United States.ORCID 0000-0002-1849-2635
Kriti ShahDepartment of Biochemistry, University of California, Riverside, California 92521-0403, United States.
Shiyuan GuoGenetics, Genomics and Bioinformatics Graduate Program, University of California, Riverside, California 92521-0403, United States.
Zheng DuanDepartment of Chemistry, University of California, Riverside, California 92521-0403, United States.
Jernej MurnDepartment of Biochemistry, University of California, Riverside, California 92521-0403, United States.
Yinsheng WangDepartment of Chemistry, University of California, Riverside, California 92521-0403, United States.ORCID 0000-0001-5565-283X

Funding

Chemical Biology of DNA and RNA AlkylationR35ES031707 · NIEHS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI Yinsheng Wang · 2020 to 2026
$6.1M
Research Training in Environmental ToxicologyT32ES018827 · NIEHS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI Yinsheng Wang · 2010 to 2026
$5.3M
NIEHS NIH HHS R35 ES031707NIEHS NIH HHS T32 ES018827
6 · The paper itself

Abstract

Pseudouridine (Ψ) is the most abundant RNA modification in nature; however, not much is known about the biological functions of this modified nucleoside. Employing an unbiased quantitative proteomics method, we identified multiple candidate reader proteins of Ψ in RNA, including a cytoskeletal protein profilin-1 (PFN1). We demonstrated that PFN1 binds directly and selectively to Ψ-containing RNA. Additionally, we discovered approximately 4000 binding sites of PFN1 in human cells, including a known dyskerin (DKC1)-installed Ψ site in

Indexed as

ProfilinsProteomicsPseudouridineCell Cycle ProteinsHumansNuclear ProteinsProtein BindingCell Cycle ProteinsDKC1 protein, humanNuclear ProteinsPFN1 protein, humanProfilinsPseudouridine

Identifiers

PMID39812085
PMCPMC11744752

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.