Evidence map›Paper›PMID 39811535›Full record

ArticleData in brief2025

Building a near-infrared (NIR) soil spectral dataset and predictive machine learning models using a handheld NIR spectrophotometer.

Colleen Partida, Jose Lucas Safanelli, Sadia Mannan Mitu, Mohammad Omar Faruk Murad, Yufeng Ge, Richard Ferguson, Keith Shepherd, Jonathan Sanderman

Abstract read
In one paragraph

Article in Data in brief, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Colleen PartidaWoodwell Climate Research Center, 149 Woods Hole Rd., Falmouth, MA, 02540, United States.
Jose Lucas SafanelliWoodwell Climate Research Center, 149 Woods Hole Rd., Falmouth, MA, 02540, United States.
Sadia Mannan MituDepartment of Biological Systems Engineering, University of Nebraska-Lincoln, E Campus Mall, Lincoln, NE, 68583, United States.
Mohammad Omar Faruk MuradDepartment of Biological Systems Engineering, University of Nebraska-Lincoln, E Campus Mall, Lincoln, NE, 68583, United States.
Yufeng GeDepartment of Biological Systems Engineering, University of Nebraska-Lincoln, E Campus Mall, Lincoln, NE, 68583, United States.
Richard FergusonUSDA, Natural Resources Conservation Service (NRCS), National Soil Survey Center (NSSC), Kellogg Soil Survey Laboratory (KSSL), 1121 Lincoln Mall, Lincoln, NE, 68508, United States.
Keith ShepherdInnovative Solutions for Decision Agriculture (iSDA), Rothamsted Campus, West Common, Harpendedn AL5 2JQ, UK.
Jonathan SandermanWoodwell Climate Research Center, 149 Woods Hole Rd., Falmouth, MA, 02540, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This near-infrared spectral dataset consists of 2,106 diverse mineral soil samples scanned, on average, on six different units of the same low-cost commercially available handheld spectrophotometer. Most soil samples were selected from the USDA NRCS National Soil Survey Center-Kellogg Soil Survey Laboratory (NSSC-KSSL) soil archives to represent the diversity of mineral soils (0-30 cm) found in the United States, while 90 samples were selected from Ghana, Kenya, and Nigeria to represent available African soils in the same archive. All scanning was performed on dried and sieved (<2 mm) soil samples. Machine learning predictive models were developed for soil organic carbon (SOC), pH, bulk density (BD), carbonate (CaCO3), exchangeable potassium (Ex. K), sand, silt, and clay content from their spectra in the R programming language using most of this dataset (1,976 US soils) and are included in this data release. Two model types, Cubist and partial least squares regression (PLSR) were developed using two strategies: (1) using an average of the spectral scans across devices for each sample and, (2) using the replicate spectral scans across devices for each sample. We present the internal performance of these models here. The dry spectra and Cubist models for these soil properties are available for download from 10.5281/zenodo.7586621. An example of detailed code used to produce these models is hosted at the Open Soil Spectral Library, a free service of the Soil Spectroscopy for the Global Good Network (soilspectroscopy.org), enabling broad use of these data for multiple soil monitoring applications.

Indexed as

ChemometricsPedometricsSoil analysisSoil organic carbonSoil spectroscopy

Identifiers

PMID39811535
PMCPMC11731769

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.