Evidence map›Paper›PMID 39811231›Full record

ArticleCureus2024

The Impact of Temperature on Extracting Information From Clinical Trial Publications Using Large Language Models.

Paul Windisch, Fabio Dennstädt, Carole Koechli, Christina Schröder, Daniel M Aebersold, Robert Förster, Daniel R Zwahlen

Abstract read
In one paragraph

Article in Cureus, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Paul WindischDepartment of Radiation Oncology, Cantonal Hospital Winterthur, Winterthur, CHE.
Fabio DennstädtDepartment of Radiation Oncology, Bern University Hospital, University of Bern, Bern, CHE.
Carole KoechliDepartment of Radiation Oncology, Cantonal Hospital Winterthur, Winterthur, CHE.
Christina SchröderDepartment of Radiation Oncology, Cantonal Hospital Winterthur, Winterthur, CHE.
Daniel M AebersoldDepartment of Radiation Oncology, Bern University Hospital, University of Bern, Bern, CHE.
Robert FörsterDepartment of Radiation Oncology, Cantonal Hospital Winterthur, Winterthur, CHE.
Daniel R ZwahlenDepartment of Radiation Oncology, Cantonal Hospital Winterthur, Winterthur, CHE.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction The application of natural language processing (NLP) for extracting data from biomedical research has gained momentum with the advent of large language models (LLMs). However, the effect of different LLM parameters, such as temperature settings, on biomedical text mining remains underexplored and a consensus on what settings can be considered "safe" is missing. This study evaluates the impact of temperature settings on LLM performance for a named entity recognition and a classification task in clinical trial publications. Methods Two datasets were analyzed using GPT-4o and GPT-4o-mini models at nine different temperature settings (0.00-2.00). The models were used to extract the number of randomized participants and classify abstracts as randomized controlled trials (RCTs) and/or as oncology-related. Different performance metrics were calculated for each temperature setting and task. Results Both models provided correctly formatted predictions for more than 98.7% of abstracts across temperatures from 0.00 to 1.50. While the number of correctly formatted predictions started to decrease afterward with the most notable drop between temperatures 1.75 and 2.00, the other performance metrics remained largely stable. Conclusion Temperature settings at or below 1.50 yielded consistent performance across text-mining tasks, with performance declines at higher settings. These findings are aligned with research on different temperature settings for other tasks, suggesting stable performance within a controlled temperature range across various NLP applications.

Indexed as

large language modelsnatural language processingtemperaturetext miningtransformer

Identifiers

PMID39811231
PMCPMC11731902

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.