Evidence map›Paper›PMID 39809263›Full record

ArticleCell reports. Medicine2025

Single-molecule systems for the detection and monitoring of plasma-circulating nucleosomes and oncoproteins in diffuse midline glioma.

Nir Erez, Noa Furth, Vadim Fedyuk, Jack Wadden, Rayan Aittaleb, Tiffany Adam, Kallen Schwark, Michael Niculcea, Madeline Miclea, Rajen Mody and 12 more

Abstract read
In one paragraph

Article in Cell reports. Medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors.

Nir ErezDepartment of Immunology and Regenerative Biology, Weizmann Institute of Science, Rehovot, Israel.
Noa FurthDepartment of Immunology and Regenerative Biology, Weizmann Institute of Science, Rehovot, Israel.
Vadim FedyukDepartment of Immunology and Regenerative Biology, Weizmann Institute of Science, Rehovot, Israel.
Jack WaddenDepartment of Pediatrics, University of Michigan, Ann Arbor, MI, USA.
Rayan AittalebDepartment of Pediatrics, University of Michigan, Ann Arbor, MI, USA.
Tiffany AdamDepartment of Pediatrics, University of Michigan, Ann Arbor, MI, USA.
Kallen SchwarkDepartment of Pediatrics, University of Michigan, Ann Arbor, MI, USA.
Michael NiculceaDepartment of Pediatrics, University of Michigan, Ann Arbor, MI, USA.
Madeline MicleaDepartment of Pediatrics, University of Michigan, Ann Arbor, MI, USA.
Rajen ModyDepartment of Pediatrics, University of Michigan, Ann Arbor, MI, USA.
Andrea FransonDepartment of Pediatrics, University of Michigan, Ann Arbor, MI, USA.
Hemant A ParmarDepartment of Radiology, University of Michigan, Ann Arbor, MI, USA.
Mohannad IbrahimDepartment of Radiology, University of Michigan, Ann Arbor, MI, USA.
Benison LauDepartment of Radiology, University of Michigan, Ann Arbor, MI, USA.
Augustine EzeCenter for Genetic Medicine, Children's National Medical Center, Washington, DC, USA.
Niku NourmohammadiCenter for Genetic Medicine, Children's National Medical Center, Washington, DC, USA.
Iris FriedUnit of Pediatric Hematology Oncology, The Eisenberg R&D Authority, Shaare Zedek Medical Center, Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
Javad NazarianCenter for Genetic Medicine, Children's National Medical Center, Washington, DC, USA.
Guy RonRacah Institute of Physics, Hebrew University, Jerusalem, Israel.
Sriram VennetiDepartment of Pathology, University of Michigan, Ann Arbor, MI, USA.
Carl KoschmannDepartment of Pediatrics, University of Michigan, Ann Arbor, MI, USA. Electronic address: ckoschma@med.umich.edu.
Efrat ShemaDepartment of Immunology and Regenerative Biology, Weizmann Institute of Science, Rehovot, Israel. Electronic address: efrat.shema@weizmann.ac.il.

Funding

MICHIGAN MEDICAL SCIENTIST TRAINING PROGRAMT32GM007863 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI COLLINS, KATHLEEN L. · 1985 to 2024
$38.3M
Training Program in Molecular HematologyT32HL007622 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SUNG WON CHOI, Jordan A. Shavit · 1986 to 2026
$9.2M
Targeting integrated metabolic and epigenetic pathways in childhood ependymomasR01CA261926 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Deepak Nagrath, Benita Tamrazi · 2022 to 2026
$3.0M
Unravelling metabolic dependencies in H3K27M mutant DIPGR01NS110572 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Sriram Venneti · 2019 to 2026
$2.7M
Targeting EGFR/FOXG1-mediated resistance to ONC201 in H3K27M-mutant diffuse midline gliomaR01NS124607 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Carl J Koschmann · 2022 to 2026
$2.2M
The role of ATRX mutation in the epigenetic dysregulation of cell cycle in pediatric high-grade gliomaR01NS119231 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KOSCHMANN, CARL J · 2021 to 2025
$1.9M
Targeting metabolic dependencies in ZFTA-RELA fusion childhood ependymomasR01NS127799 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Sriram Venneti · 2023 to 2026
$1.8M
NCI NIH HHS R01 CA261926NHLBI NIH HHS T32 HL007622NIGMS NIH HHS T32 GM007863NINDS NIH HHS R01 NS110572NINDS NIH HHS R01 NS119231NINDS NIH HHS R01 NS124607NINDS NIH HHS R01 NS127799
6 · The paper itself

Abstract

The analysis of cell-free tumor DNA (ctDNA) and proteins in the blood of patients with cancer potentiates a new generation of non-invasive diagnostic approaches. However, confident detection of tumor-originating markers is challenging, especially in the context of brain tumors, where these analytes in plasma are extremely scarce. Here, we apply a sensitive single-molecule technology to profile multiple histone modifications on individual nucleosomes from the plasma of patients with diffuse midline glioma (DMG). The system reveals epigenetic patterns unique to DMG, significantly differentiating this group of patients from healthy subjects or individuals diagnosed with other cancer types. We further develop a method to directly quantify the tumor-originating oncoproteins, lysine 27 to methionine substitution in histone H3 (H3-K27M) and mutant p53, from <1 mL of plasma, allowing for the accurate molecular classification of patients with DMG. We show that our strategy correlates with MRI and droplet-digital PCR (ddPCR) measurements of ctDNA, highlighting the clinical potential of single-molecule-based, multi-parametric assays for DMG diagnosis and treatment monitoring.

Indexed as

Brain NeoplasmsGliomaNucleosomesSingle Molecule ImagingAdultBiomarkers, TumorCirculating Tumor DNAFemaleHistonesHumansMaleMiddle AgedTumor Suppressor Protein p53Biomarkers, TumorCirculating Tumor DNAHistonesNucleosomesTumor Suppressor Protein p53DIPGH3-K27Mliquid-biopsyoncohistonessingle-moleculeTP53

Identifiers

PMID39809263
PMCPMC11866549

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.