Evidence map›Paper›PMID 39808625›Full record

ArticlePloS one2025

CBGTPy: An extensible cortico-basal ganglia-thalamic framework for modeling biological decision making.

Matthew Clapp, Jyotika Bahuguna, Cristina Giossi, Jonathan E Rubin, Timothy Verstynen, Catalina Vich

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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  6. Arkypallidal neurons in the external globus pallidus can mediate inhibitory control by altering competition in the striatum.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Matthew ClappDepartment of Psychology & Neuroscience Institute, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.ORCID 0000-0001-6701-195X
Jyotika BahugunaDepartment of Psychology & Neuroscience Institute, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Cristina GiossiDepartament de Ciències Matemàtiques i Informàtica, Universitat de les Illes Balears, Palma, Spain.ORCID 0000-0001-6873-4404
Jonathan E RubinCenter for the Neural Basis of Cognition, Pittsburgh, Pennsylvania, United States of America.ORCID 0000-0002-1513-1551
Timothy VerstynenDepartment of Psychology & Neuroscience Institute, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Catalina VichDepartament de Ciències Matemàtiques i Informàtica, Universitat de les Illes Balears, Palma, Spain.ORCID 0000-0002-6305-9371

Funding

CRCNS: Decision dynamics in cortico-basal ganglia-thalamic networksR01DA059993 · NIDA · CARNEGIE-MELLON UNIVERSITY · PI Jonathan E. Rubin, TIMOTHY D VERSTYNEN · 2023 to 2026
$1.3M
CRCNS Circuit-Level Mechanisms of Adaptive decision-makingR01DA053014 · NIDA · CARNEGIE-MELLON UNIVERSITY · PI VERSTYNEN, TIMOTHY D · 2020 to 2022
$1.0M
NIDA NIH HHS R01 DA053014NIDA NIH HHS R01 DA059993
6 · The paper itself

Abstract

Here we introduce CBGTPy, a virtual environment for designing and testing goal-directed agents with internal dynamics that are modeled on the cortico-basal-ganglia-thalamic (CBGT) pathways in the mammalian brain. CBGTPy enables researchers to investigate the internal dynamics of the CBGT system during a variety of tasks, allowing for the formation of testable predictions about animal behavior and neural activity. The framework has been designed around the principle of flexibility, such that many experimental parameters in a decision making paradigm can be easily defined and modified. Here we demonstrate the capabilities of CBGTPy across a range of single and multi-choice tasks, highlighting the ease of set up and the biologically realistic behavior that it produces. We show that CBGTPy is extensible enough to apply to a range of experimental protocols and to allow for the implementation of model extensions with minimal developmental effort.

Indexed as

Basal GangliaCerebral CortexDecision MakingModels, NeurologicalThalamusAnimalsNeural Pathways

Identifiers

PMID39808625
PMCPMC11731724

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.