Evidence map›Paper›PMID 39807940›Full record

ArticleMicrobiology resource announcements2025

A genome-annotated bacterial collection of the plant food system microbiota.

Laura Pietrantonio, Marion Devers-Lamrani, Peter Thorpe, Catherine Arnton, Senga Robertson-Albertyn, Castrense Savojardo, Alain Hartmann, Fabrice Martin-Laurent, James Abbott, Davide Bulgarelli

Abstract read
In one paragraph

Article in Microbiology resource announcements, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. mSphere · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Laura Pietrantonio *MS Biotech, Larino, Campobasso, Italy.
Marion Devers-Lamrani *INRAE, Institut Agro Dijon, Université de Bourgogne, Agroécologie, Dijon, France.ORCID 0000-0002-0316-4700
Peter Thorpe *Computational Biology, School of Life Sciences, University of Dundee, Dundee, United Kingdom.ORCID 0000-0001-8572-4654
Catherine ArntonPlant Sciences, School of Life Sciences, University of Dundee, Dundee, United Kingdom.ORCID 0009-0001-2775-8060
Senga Robertson-AlbertynPlant Sciences, School of Life Sciences, University of Dundee, Dundee, United Kingdom.ORCID 0000-0001-5907-714X
Castrense SavojardoDepartment of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy.ORCID 0000-0002-7359-0633
Alain HartmannINRAE, Institut Agro Dijon, Université de Bourgogne, Agroécologie, Dijon, France.ORCID 0000-0001-6034-5068
Fabrice Martin-LaurentINRAE, Institut Agro Dijon, Université de Bourgogne, Agroécologie, Dijon, France.ORCID 0000-0001-9410-8319
James AbbottComputational Biology, School of Life Sciences, University of Dundee, Dundee, United Kingdom.ORCID 0000-0001-7701-4249
Davide BulgarelliPlant Sciences, School of Life Sciences, University of Dundee, Dundee, United Kingdom.ORCID 0000-0002-2020-6642

Funding

EC | Horizon 2020 Framework Programme (H2020) 818290UKRI | Biotechnology and Biological Sciences Research Council (BBSRC) 2734186
6 · The paper itself

Abstract

This study reports draft genomes of 30 bacteria representative of the plant food system microbiota and isolated from different sources in Italy and France. Individual genomes were reconstructed using PacBIO DNA sequencing: taxonomic classification and distribution of genes involved in microbe-environment interactions are reported to facilitate strains' characterization and utilization.

Indexed as

bacillifood system microbiotaPacBio HiFirhizobiawhole-genome sequencing

Identifiers

PMID39807940
PMCPMC11812413

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.