Evidence map›Paper›PMID 39807938›Full record

ArticleMicrobiology spectrum2025

Whole-genome sequencing and phylogenetic analysis of

Yagya Adhikari, Matthew A Bailey, Steven Kitchens, Pankaj Gaonkar, Luis R Munoz, Stuart B Price, Dianna V Bourassa, Laura Huber, Richard J Buhr, Kenneth S Macklin

Abstract read
In one paragraph

Article in Microbiology spectrum, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Genomic characterization of avian pathogenicApplied and environmental microbiology · 2026
    Article
  4. Review
  5. Article
  6. Investigating the differences inFrontiers in veterinary science · 2026
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yagya AdhikariDepartment of Poultry Science, Auburn University, Auburn, Alabama, USA.
Matthew A BaileyDepartment of Poultry Science, Auburn University, Auburn, Alabama, USA.
Steven KitchensDeparment of Pathobiology, Auburn University, Auburn, Alabama, USA.
Pankaj GaonkarDeparment of Pathobiology, Auburn University, Auburn, Alabama, USA.
Luis R MunozDepartment of Poultry Science, Auburn University, Auburn, Alabama, USA.
Stuart B PriceDeparment of Pathobiology, Auburn University, Auburn, Alabama, USA.
Dianna V BourassaDepartment of Poultry Science, Auburn University, Auburn, Alabama, USA.
Laura HuberDeparment of Pathobiology, Auburn University, Auburn, Alabama, USA.ORCID 0000-0002-5138-0336
Richard J BuhrUSDA ARS Poultry Microbiological Safety and Processing Research Unit, Athens, Georgia, USA.
Kenneth S MacklinDepartment of Poultry Science, Mississippi State University, Starkville, Mississippi, USA.ORCID 0000-0002-2707-8866

Funding

U.S. Department of Agriculture (USDA) 6040-32000-085-002-S
6 · The paper itself

Abstract

IMPORTANCE:

Indexed as

ChickensPoultry DiseasesSalmonellaSalmonella Infections, AnimalAnimalsFood MicrobiologyGenome, BacterialLongitudinal StudiesPhylogenyWhole Genome Sequencingchickensfacilitiesprevalenceproduction farmsSalmonellasample types

Identifiers

PMID39807938
PMCPMC11792521

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.