Evidence map›Paper›PMID 39807625›Full record

ArticleGenes to cells : devoted to molecular & cellular mechanisms2025

HIF1α Plays a Crucial Role in the Development of TFE3-Rearranged Renal Cell Carcinoma by Orchestrating a Metabolic Shift Toward Fatty Acid Synthesis.

Hidekazu Nishizawa, Shintaro Funasaki, Wenjuan Ma, Yoshiaki Kubota, Kazuhide Watanabe, Yuichiro Arima, Shoichiro Kuroda, Takaaki Ito, Mitsuko Furuya, Takanobu Motoshima and 14 more

Abstract read
In one paragraph

Article in Genes to cells : devoted to molecular & cellular mechanisms, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Hidekazu NishizawaDepartment of Urology, Graduate School of Medical Sciences, Kumamoto University, Kumamoto, Japan.
Shintaro FunasakiDivison of Molecular and Vascular Biology, IRDA, Kumamoto University, Kumamoto, Japan.
Wenjuan MaCambridge Stem Cell Institute, University of Cambridge, Cambridge, UK.
Yoshiaki KubotaDepartment of Anatomy, Institute for Advanced Medical Research and Keio University School of Medicine, Tokyo, Japan.
Kazuhide WatanabeRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Yuichiro ArimaDevelopmental Cardiology Laboratory, International Research Center for Medical Science (IRCMS), Kumamoto University, Kumamoto, Japan.
Shoichiro KurodaDepartment of Urology, Graduate School of Medical Sciences, Kumamoto University, Kumamoto, Japan.
Takaaki ItoDepartment of Medical Technology, Kumamoto Health Science University Faculty of Health Sciences, Kumamoto, Japan.
Mitsuko FuruyaDepartment of Surgical Pathology, Hokkaido University Hospital, Sapporo, Japan.
Takanobu MotoshimaDepartment of Urology, Graduate School of Medical Sciences, Kumamoto University, Kumamoto, Japan.
Akira NishiyamaDepartment of Immunology, Yokohama City University Graduate School of Medicine, Kanagawa, Japan.
Sally MehannaBiotechnology Department, Faculty of Nanotechnology for Postgraduate Studies, Cairo University, Ad Doqi, Egypt.
Yorifumi SatouDivision of Genomics and Transcriptomics, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.
Hisashi HasumiDepartment of Urology, Yokohama City University Graduate School of Medicine, Kanagawa, Japan.
Ryosuke JikuyaDepartment of Urology, Yokohama City University Graduate School of Medicine, Kanagawa, Japan.
Kazuhide MakiyamaDepartment of Urology, Yokohama City University Graduate School of Medicine, Kanagawa, Japan.
Tomohiko TamuraDepartment of Immunology, Yokohama City University Graduate School of Medicine, Kanagawa, Japan.
Yuichi OikeDepartment of Molecular Genetics, Graduate School of Medical Sciences, Kumamoto University, Kumamoto, Japan.
Yasuhito TanakaDepartment of Gastroenterology and Hepatology, Graduate School of Medical Sciences, Kumamoto University, Kumamoto, Japan.
Toshio SudaLaboratory of Stem Cell Regulation, International Research Center for Medical Science (IRCMS), Kumamoto University, Kumamoto, Japan.
Laura S SchmidtUrologic Oncology Branch, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
W Marston LinehanUrologic Oncology Branch, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Masaya BabaDepartment of Urology, Graduate School of Medical Sciences, Kumamoto University, Kumamoto, Japan.ORCID https://orcid.org/0000-0002-5308-6683
Tomomi KambaDepartment of Urology, Graduate School of Medical Sciences, Kumamoto University, Kumamoto, Japan.

Funding

Japan Society for the Promotion of Science JP20K09560Japan Society for the Promotion of Science JP21K06000Japan Society for the Promotion of Science JP21K09374Japan Society for the Promotion of Science JP21K19721Japan Society for the Promotion of Science JP23K24474Japan Society for the Promotion of Science JP23K27589Japan Society for the Promotion of Science JP 24K02578Japan Society for the Promotion of Science JP24K09315Ministry of Education, Culture, Sports, Science and Technology JPMXP0618217493Ministry of Education, Culture, Sports, Science and Technology JPMXP0622717006Ministry of Education, Culture, Sports, Science and Technology JPMXP0723833149NCI NIH HHS HHSN261201500003CNCI NIH HHS HHSN261201500003I
6 · The paper itself

Abstract

Tumor development often requires cellular adaptation to a unique, high metabolic state; however, the molecular mechanisms that drive such metabolic changes in TFE3-rearranged renal cell carcinoma (TFE3-RCC) remain poorly understood. TFE3-RCC, a rare subtype of RCC, is defined by the formation of chimeric proteins involving the transcription factor TFE3. In this study, we analyzed cell lines and genetically engineered mice, demonstrating that the expression of the chimeric protein PRCC-TFE3 induced a hypoxia-related signature by transcriptionally upregulating HIF1α and HIF2α. The upregulation of HIF1α by PRCC-TFE3 led to increased cellular ATP production by enhancing glycolysis, which also supplied substrates for the TCA cycle while maintaining mitochondrial oxidative phosphorylation. We crossed TFE3-RCC mouse models with Hif1α and/or Hif2α knockout mice and found that Hif1α, rather than Hif2α, is essential for tumor development in vivo. RNA-seq and metabolomic analyses of the kidney tissues from these mice revealed that ketone body production is inversely correlated with tumor development, whereas de novo lipid synthesis is upregulated through the HIF1α/SREBP1-dependent mechanism in TFE3-RCC. Our data suggest that the coordinated metabolic shift via the PRCC-TFE3/HIF1α/SREBP1 axis is a key mechanism by which PRCC-TFE3 enhances cancer cell metabolism, promoting tumor development in TFE3-RCC.

Indexed as

Basic Helix-Loop-Helix Leucine Zipper Transcription FactorsCarcinoma, Renal CellFatty AcidsHypoxia-Inducible Factor 1, alpha SubunitKidney NeoplasmsAnimalsBasic Helix-Loop-Helix ProteinsCell Line, TumorEndothelial PAS Domain-Containing Protein 1Gene Expression Regulation, NeoplasticHumansMiceMice, KnockoutBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBasic Helix-Loop-Helix ProteinsEndothelial PAS Domain-Containing Protein 1Fatty AcidsHif1a protein, mouseHypoxia-Inducible Factor 1, alpha SubunitTcfe3 protein, mouseTFE3 protein, humanglycolysisHIF1αketone body productionlipid synthesismetabolismSREBP1TFE3–rearranged renal cell carcinoma

Identifiers

PMID39807625
PMCPMC11729263

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.