Evidence map›Paper›PMID 39805837›Full record

ArticleNature communications2025

Mutations to transcription factor MAX allosterically increase DNA selectivity by altering folding and binding pathways.

Renee Hastings, Arjun K Aditham, Nicole DelRosso, Peter H Suzuki, Polly M Fordyce

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Transcriptomic Analysis Reveals HowLife (Basel, Switzerland) · 2026
    Article
  3. Amplicon/Protein Bead Display enables quantitativebioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. ADAPT-M: A workflow for rapid, quantitativebioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Renee HastingsBiophysics Program, Stanford University, Stanford, CA, USA.
Arjun K AdithamDepartment of Bioengineering, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-9839-7733
Nicole DelRossoBiophysics Program, Stanford University, Stanford, CA, USA.
Peter H SuzukiDepartment of Bioengineering, Stanford University, Stanford, CA, USA.
Polly M FordyceBiophysics Program, Stanford University, Stanford, CA, USA. pfordyce@stanford.edu.ORCID http://orcid.org/0000-0002-9505-0638

Funding

National Science Foundation (NSF) 2142336
6 · The paper itself

Abstract

Understanding how proteins discriminate between preferred and non-preferred ligands ('selectivity') is essential for predicting biological function and a central goal of protein engineering efforts, yet the biophysical mechanisms underpinning selectivity remain poorly understood. Towards this end, we study how variants of the promiscuous transcription factor (TF) MAX (H. sapiens) alter DNA specificity and selectivity, yielding >1700 K

Indexed as

Basic-Leucine Zipper Transcription FactorsDNAAllosteric RegulationHumansKineticsLigandsMutationProtein BindingProtein FoldingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsThermodynamicsBasic-Leucine Zipper Transcription FactorsDNALigandsSaccharomyces cerevisiae Proteins

Identifiers

PMID39805837
PMCPMC11729911

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.