Evidence map›Paper›PMID 39804946›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2025

Automated and Efficient Sampling of Chemical Reaction Space.

Minhyeok Lee, Umit V Ucak, Jinyoung Jeong, Islambek Ashyrmamatov, Juyong Lee, Eunji Sim

Abstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Automated and Efficient Sampling of Chemical Reaction Space.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Minhyeok LeeDepartment of Chemistry, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.ORCID https://orcid.org/0009-0002-7858-351X
Umit V UcakResearch Institute of Pharmaceutical Science, College of Pharmacy, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea.ORCID https://orcid.org/0000-0002-9088-0915
Jinyoung JeongDepartment of Chemistry, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.ORCID https://orcid.org/0009-0003-1905-6485
Islambek AshyrmamatovCollege of Pharmacy, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea.ORCID https://orcid.org/0000-0001-6704-4233
Juyong LeeResearch Institute of Pharmaceutical Science, College of Pharmacy, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea.ORCID https://orcid.org/0000-0003-1174-4358
Eunji SimDepartment of Chemistry, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.ORCID https://orcid.org/0000-0002-4139-0960

Funding

Institute of Information & communications Technology Planning & Evaluation RS-2023-00220628Korea Environmental Industry and Technology Institute RS-2023-00219144National Research Foundation of Korea 2020M3A9G7103933National Research Foundation of Korea 2020R1A2C2007468National Research Foundation of Korea 2022M3E5F3081268National Research Foundation of Korea 2022R1C1C1005080National Research Foundation of Korea RS-2023-00256320
6 · The paper itself

Abstract

Machine learning interatomic potentials (MLIPs) promise quantum-level accuracy at classical force field speeds, but their performance hinges on the quality and diversity of training data. An efficient and fully automated approach to sample chemical reaction space without relying on human intuition, addressing a critical gap in MLIP development is presented. The method combines the speed of tight-binding calculations with selective high-level refinement, generating diverse datasets that capture both equilibrium and reactive regions of potential energy surfaces. By employing single-ended growing string and nudged elastic band methods, reaction pathways previously underrepresented in MLIP training sets, particularly near transition states are systematically explored. This approach yields datasets with rich structural and chemical diversity, essential for robust MLIP development. Open-source code is provided for the entire workflow, facilitating the integration of the approach into existing MLIP development pipelines.

Indexed as

chemical reaction spacedataset generationmachine learning interatomic potential

Identifiers

PMID39804946
PMCPMC11884589

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.