Evidence map›Paper›PMID 39804482›Full record

ArticleInternational journal of legal medicine2025

Systematic optimisation of crude buccal swab lysate protocols for use with the ForenSeq™ DNA Signature Prep Kit.

Donna-Lee Pamela Martin, Laura Jane Heathfield

Abstract read
In one paragraph

Article in International journal of legal medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Research progress on direct PCR and its applications.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2026
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Donna-Lee Pamela MartinDivision of Forensic Medicine and Toxicology, Department of Pathology, Faculty of Health Science, University of Cape Town, Cape Town, South Africa.ORCID http://orcid.org/0000-0003-0400-9873
Laura Jane HeathfieldDivision of Forensic Medicine and Toxicology, Department of Pathology, Faculty of Health Science, University of Cape Town, Cape Town, South Africa. laura.heathfield@uct.ac.za.ORCID http://orcid.org/0000-0002-4860-9419

Funding

National Health Laboratory Services GRANT95842 95530National Research Foundation PMDS230720137366
6 · The paper itself

Abstract

The ForenSeq™ DNA Signature Prep kit has not been thoroughly tested with crude buccal swab lysates in large-scale population studies using massively parallel sequencing (MPS). Commonly used lysis buffers for swabs intending to undergo direct polymerase chain reaction (PCR) are SwabSolution™ and STR GO! Lysis Buffers, and these have been successfully used to generate population data using capillary electrophoresis (CE) systems. In this study, we investigated the performance and optimisation of SwabSolution™ and STR GO! lysates with the ForenSeq™ DNA Signature Prep workflow and addressed the challenge of failed MPS profiles in initial trials. To mitigate PCR inhibition in SwabSolution™ lysates, three optimisation methods were evaluated: dilution of lysates, addition of 5X AmpSolution

Indexed as

DNADNA FingerprintingHigh-Throughput Nucleotide SequencingMouth MucosaSpecimen HandlingBuffersHumansMicrosatellite RepeatsPolymerase Chain ReactionBuffersDNADirect PCRForenSeqT M DNA Signature Prep kitOptimisationPopulation studyPromega SwabSolutionQIAGEN STR GO! Lysis buffer

Identifiers

PMID39804482
PMCPMC12003550

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.