Evidence map›Paper›PMID 39804479›Full record

ArticleJournal of molecular modeling2025

Towards a unified fold-cusp model for bond polarity scaling: electron rearrangements in the pyrolytic isomerization of cubane to cyclooctatetraene.

Leandro Ayarde-Henríquez, Cristian Guerra, Patricia Pérez, Eduardo Chamorro

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Article in Journal of molecular modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Leandro Ayarde-HenríquezSchool of Physics, Trinity College Dublin, Dublin, Dublin 2, Ireland. leandro.ayarde@tcd.ie.ORCID http://orcid.org/0000-0001-5963-6028
Cristian GuerraFacultad de Ingeniería, Universidad Autónoma de Chile, Avenida Pedro de Valdivia 425, 7500912, Santiago, Chile. guerracbn@gmail.com.ORCID http://orcid.org/0000-0002-9664-2504
Patricia PérezFacultad de Ciencias Exactas, Departamento de Ciencias Químicas, Universidad Andrés Bello, Avenida República 275, 8370146, Santiago, Chile. p.perez@unab.cl.ORCID http://orcid.org/0000-0002-6920-703X
Eduardo ChamorroDepartamento de Investigación y Desarrollo, ConsultoresAcademicos SpA, Moneda 1137, 8340457, Santiago, Chile. ed.chamorro9@gmail.com.ORCID http://orcid.org/0000-0002-9200-9859

Funding

Fondo Nacional de Ciencia y Tecnología (FONDECYT-ANID, Chile) 1181582Fondo Nacional de Ciencia y Tecnología (FONDECYT-ANID, Chile) 1221383
6 · The paper itself

Abstract

contextThis study meticulously examines the criteria for assigning electron rearrangements along the intrinsic reaction coordinate (IRC) leading to bond formation and breaking processes during the pyrolytic isomerization of cubane (CUB) to 1,3,5,7-cyclooctatetraene (COT) from both thermochemical and bonding perspectives. Notably, no cusp-type function was detected in the initial thermal conversion step of CUB to bicyclo[4.2.0]octa-2,4,7-triene (BOT). Contrary to previous reports, all relevant fluxes of the pairing density must be described in terms of fold unfolding. The transannular ring opening in the second step highlights characteristics indicative of a cusp-type catastrophe, facilitating a direct comparison with fold features. This fact underscores the critical role of density symmetry persistence near topographical events in determining the type of bifurcation. A fold-cusp unified model for scaling the polarity of chemical bonds is proposed, integrating ubiquitous reaction classes such as isomerization, bimolecular nucleophilic substitution, and cycloaddition. The analysis reveals that bond polarity index (BPI) values within the [0, 10

methodsGeometry optimization and frequency calculations were conducted using various DFT functionals. In line with recent findings concerning the rigorous application of BET, the characterization of bond formations and scissions via unfoldings was carried out by carefully monitoring the determinant of the Hessian matrix at all potentially degenerate CPs and their relative distance. The computed gas-phase activation enthalpies strongly align with experimental values, stressing the adequacy of the chosen levels of theory in describing the ELF topography along the IRC. The BPI was determined using the methodology proposed by Allen and collaborators.

Indexed as

Annulenes thermal isomerizationBonding evolution theory (BET)Catastrophe theoryElectron density symmetryGas-phase thermochemistryHessian matrix

Identifiers

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.