Evidence map›Paper›PMID 39803932›Full record

ArticleSoft matter2025

Phage probes couple to DNA relaxation dynamics to reveal universal behavior across scales and regimes.

Farshad Safi Samghabadi, Juexin Marfai, Camyla Cueva, Mehdi Aporvari, Philip Neill, Maede Chabi, Rae M Robertson-Anderson, Jacinta C Conrad

Abstract read
In one paragraph

Article in Soft matter, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Farshad Safi SamghabadiDepartment of Chemical & Biomolecular Engineering, University of Houston, Houston, TX 77204, USA. jcconrad@uh.edu.ORCID http://orcid.org/0000-0003-0556-000X
Juexin MarfaiDepartment of Physics and Biophysics, University of San Diego, San Diego, CA 92110, USA. randerson@sandiego.edu.
Camyla CuevaDepartment of Physics and Biophysics, University of San Diego, San Diego, CA 92110, USA. randerson@sandiego.edu.
Mehdi AporvariDepartment of Physics and Biophysics, University of San Diego, San Diego, CA 92110, USA. randerson@sandiego.edu.ORCID http://orcid.org/0000-0003-0993-5737
Philip NeillDepartment of Physics and Biophysics, University of San Diego, San Diego, CA 92110, USA. randerson@sandiego.edu.ORCID http://orcid.org/0000-0001-8595-808X
Maede ChabiDepartment of Biomedical Engineering, University of Houston, Houston, TX 77204, USA.
Rae M Robertson-AndersonDepartment of Physics and Biophysics, University of San Diego, San Diego, CA 92110, USA. randerson@sandiego.edu.ORCID http://orcid.org/0000-0003-4475-4667
Jacinta C ConradDepartment of Chemical & Biomolecular Engineering, University of Houston, Houston, TX 77204, USA. jcconrad@uh.edu.ORCID http://orcid.org/0000-0001-6084-4772

Funding

Biomimetic cytoskeleton and advanced microscopy to reveal intracellular DNA dynamics and distributionsR15GM123420 · NIGMS · UNIVERSITY OF SAN DIEGO · PI MCGORTY, RYAN, ROBERTSON-ANDERSON, RAE MARIE · 2017 to 2022
$939k
NIGMS NIH HHS R15 GM123420
6 · The paper itself

Abstract

Microrheology has become an indispensable tool for measuring the dynamics of macromolecular systems. Yet, its ability to characterize polymer dynamics across spatiotemporal scales, which vary among polymers and concentration regimes, is limited by the selection of probe morphologies and sizes. Here, we introduce semiflexible M13 phage as a powerful microrheological probe able to circumvent these constraints to robustly capture the dynamics of polymeric solutions across decades of concentrations, sizes, and ionic conditions. We show that phage mobility directly couples to the relaxation dynamics of DNA solutions spanning from semidilute to entangled regimes with ionic strengths varying by four orders of magnitude. Phage mobility metrics across a broad range of timescales collapse onto universal master curves that are unexpectedly insensitive to ionic strength and exhibit robust crossovers from semidilute to entangled regime scaling, not captured by current theoretical models. Our results open the door to the use of phage probes to elucidate the complex dynamics of systems exhibiting a spectrum of thermal and active relaxation processes.

Indexed as

Bacteriophage M13DNADNA, ViralOsmolar ConcentrationRheologyDNADNA, Viral

Identifiers

PMID39803932
PMCPMC11955148

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.