Evidence map›Paper›PMID 39799244›Full record

ArticleCommunications biology2025

A Native LH1-RC-HiPIP Supercomplex from an Extremophilic Phototroph.

Kazutoshi Tani, Ryo Kanno, Kenji V P Nagashima, Mai Kawakami, Naho Hiwatashi, Kazuna Nakata, Sakiko Nagashima, Kazuhito Inoue, Shinichi Takaichi, Endang R Purba and 7 more

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Kazutoshi Tani *Center for Computational Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, Japan. ktani@ccs.tsukuba.ac.jp.ORCID http://orcid.org/0000-0003-4835-154X
Ryo Kanno *Quantum Wave Microscopy Unit, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, Japan.
Kenji V P NagashimaResearch Institute for Integrated Science, Kanagawa University, 3-27-1 Rokkakubashi, Kanagawa-ku, Yokohama, Kanagawa, Japan.
Mai KawakamiFaculty of Science, Ibaraki University, Mito, Japan.
Naho HiwatashiFaculty of Science, Ibaraki University, Mito, Japan.
Kazuna NakataDepartment of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, Japan.
Sakiko NagashimaResearch Institute for Integrated Science, Kanagawa University, 3-27-1 Rokkakubashi, Kanagawa-ku, Yokohama, Kanagawa, Japan.
Kazuhito InoueResearch Institute for Integrated Science, Kanagawa University, 3-27-1 Rokkakubashi, Kanagawa-ku, Yokohama, Kanagawa, Japan.
Shinichi TakaichiDepartment of Molecular Microbiology, Faculty of Life Science, Tokyo University of Agriculture, Sakuragaoka, Setagaya, Tokyo, Japan.ORCID http://orcid.org/0000-0002-1621-9141
Endang R PurbaScientific Imaging Section, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, Japan.
Malgorzata HallScientific Imaging Section, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, Japan.
Long-Jiang YuPhotosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-4962-1049
Michael T MadiganSchool of Biological Sciences, Department of Microbiology, Southern Illinois University, Carbondale, IL, USA.
Akira MizoguchiGraduate School of Medicine, Mie University, Tsu, Japan.
Bruno M HumbelProvost Office, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, Japan.ORCID http://orcid.org/0000-0002-7095-1368
Yukihiro KimuraDepartment of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, Japan. ykimura@people.kobe-u.ac.jp.ORCID http://orcid.org/0000-0003-3747-0367
Zheng-Yu Wang-OtomoFaculty of Science, Ibaraki University, Mito, Japan. wang@ml.ibaraki.ac.jp.ORCID http://orcid.org/0000-0003-1676-2002

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 22K06144MEXT | Japan Society for the Promotion of Science (JSPS) 23K05822MEXT | Japan Society for the Promotion of Science (JSPS) 24H02084MEXT | Japan Society for the Promotion of Science (JSPS) 24K01620
6 · The paper itself

Abstract

Halorhodospira (Hlr.) halophila strain BN9622 is an extremely halophilic and alkaliphilic purple phototrophic bacterium and has been widely used as a model for exploring the osmoadaptive and photosynthetic strategies employed by phototrophic extreme halophiles that enable them to thrive in hypersaline environments. Here we present the cryo-EM structures of (1) a unique native Hlr. halophila triple-complex formed from light-harvesting (LH1), the reaction center (RC), and high-potential iron-sulfur protein (HiPIP) at 2.44 Å resolution, and (2) a HiPIP-free LH1-RC complex at 2.64 Å resolution. Differing from the LH1 in the Hlr. halophila LH1-LH2 co-complex where LH1 encircles LH2, the RC-associated LH1 complex consists of 16 (rather than 18) αβ-subunits circularly surrounding the RC. These distinct forms of LH1 indicate that the number of subunits in a Hlr. halophila LH1 complex is flexible and its size is a function of the photocomplex it encircles. Like LH1 in the LH1-LH2 co-complex, the RC-associated LH1 complex also contained two forms of αβ-polypeptides and both dimeric and monomeric molecules of bacteriochlorophyll a. The majority of the isolated Hlr. halophila LH1-RC complexes contained the electron donor HiPIP bound to the surface of the RC cytochrome subunit near the heme-1 group. The bound HiPIP consisted of an N-terminal functional domain and a long C-terminal extension firmly attached to the cytochrome subunit. Despite overall highly negative surface-charge distributions for both the cytochrome subunit and HiPIP, the interface between the two proteins was relatively uncharged and neutral, forming a pathway for electron tunneling. The structure of the Hlr. halophila LH1-RC-HiPIP complex provides insights into the mechanism of light energy acquisition coupled with a long-distance electron donating process toward the charge separation site in a multi-extremophilic phototroph.

Indexed as

Bacterial ProteinsExtremophilesIron-Sulfur ProteinsLight-Harvesting Protein ComplexesPhotosynthetic Reaction Center Complex ProteinsCryoelectron MicroscopyModels, MolecularPhotosynthesisBacterial ProteinsIron-Sulfur ProteinsLight-Harvesting Protein ComplexesPhotosynthetic Reaction Center Complex Proteins

Identifiers

PMID39799244
PMCPMC11724841

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.