Evidence map›Paper›PMID 39799194›Full record

ArticleNPJ precision oncology2025

Comprehensive analysis of targetable mutations and tumor microenvironment in urachal cancer.

David J Benjamin, Tolulope T Adeyelu, Andrew Elliott, Sourat Darabi, Thomas Lee, Rana R McKay, Matthew J Oberley, Arash Rezazadeh Kalebasty

Abstract read
In one paragraph

Article in NPJ precision oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

David J BenjaminHoag Family Cancer Institute, Newport Beach, CA, 92663, USA. David.Benjamin@hoag.org.
Tolulope T AdeyeluCaris Life Sciences, Irving, TX, 75039, USA.
Andrew ElliottCaris Life Sciences, Irving, TX, 75039, USA.
Sourat DarabiHoag Family Cancer Institute, Newport Beach, CA, 92663, USA.
Thomas LeeHoag Memorial Hospital Presbyterian, Newport Beach, CA, 92663, USA.
Rana R McKayUniversity of California, San Diego Health, La Jolla, CA, USA.
Matthew J OberleyCaris Life Sciences, Irving, TX, 75039, USA.
Arash Rezazadeh KalebastyUniversity of California, Irvine, Orange, CA, 92868, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Urachal cancer, a rare malignancy, generally presents in the clinical setting with advanced stages of disease. Systemic treatment with chemotherapy is generally utilized in this setting. However, there remains a paucity of data on the effectiveness of immune checkpoint inhibitors or targeted therapies for urachal cancer. We analyzed the genomic profile of urachal cancer in order to identify potentially targetable mutations and evaluate the tumor microenvironment. 42 urachal samples were retrospectively analyzed. Our results showed that TP53, GNAS and KRAS mutations were common in urachal cancer with increased prevalence of TP53 mutation in urachal cohorts without MAPK-alterations. The tumor microenvironment demonstrated increased NK cells in MAPK-altered urachal cancer. Finally, we show that urachal cancer shares genomic and transcriptomic similarity with colorectal cancer compared to bladder cancer. This study provides new insights into the molecular profiles of urachal tumor samples and possibility of association with colorectal cancer that might guide future clinical trial design.

Identifiers

PMID39799194
PMCPMC11724964

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.