Evidence map›Paper›PMID 39798134›Full record

ArticleBioinformatics (Oxford, England)2025

tagtango: an application to compare single-cell annotations.

Bernat Bramon Mora, Helen Lindsay, Antonin Thiébaut, Kenneth D Stuart, Raphael Gottardo

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Bernat Bramon MoraBiomedical Data Science Center, Lausanne University Hospital, Vaud 1005, Switzerland.ORCID 0000-0003-4735-567X
Helen LindsayBiomedical Data Science Center, Lausanne University Hospital, Vaud 1005, Switzerland.
Antonin ThiébautBiomedical Data Science Center, Lausanne University Hospital, Vaud 1005, Switzerland.
Kenneth D StuartCenter for Global Infectious Disease Research, Seattle Children's Hospital, WA 98105, United States.ORCID 0000-0002-4064-9758
Raphael GottardoBiomedical Data Science Center, Lausanne University Hospital, Vaud 1005, Switzerland.

Funding

Systems Biology CoreU19AI128914 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI Margaret Juliana McElrath, KENNETH D STUART · 2017 to 2026
$29.5M
Chan Zuckerberg Initiative DI-0000000345NIAID NIH HHS U19 AI128914
6 · The paper itself

Abstract

summaryIn this article, we present tagtango, an innovative R package and web application designed for robust and intuitive comparison of single-cell clusters and annotations. It offers an interactive platform that simplifies the exploration of differences and similarities among different clustering and annotation methods. Leveraging single-cell data analysis and different visualizations, it allows researchers to dissect the underlying biological differences across groups. tagtango is a user-friendly application that is portable and works seamlessly across multiple operating systems. AVAILABILITY AND IMPLEMENTATION: tagtango is freely available at https://github.com/bernibra/tagtango as an R package as well as an online web service at https://tagtango.unil.ch.

Indexed as

Computational BiologyMolecular Sequence AnnotationSingle-Cell AnalysisSoftwareCluster AnalysisHumans

Identifiers

PMID39798134
PMCPMC11814489

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.