Evidence map›Paper›PMID 39798093›Full record

ArticleSTAR protocols2025

Protocol to identify endogenous proximal proteins using biotinylation by antibody recognition.

Camilla Rega, Mercedes Pardo, Lesley-Ann Martin, Jyoti Choudhary

Abstract read
In one paragraph

Article in STAR protocols, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Camilla RegaThe Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK. Electronic address: camilla.rega@icr.ac.uk.
Mercedes PardoThe Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK.
Lesley-Ann MartinThe Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK.
Jyoti ChoudharyThe Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biotinylation by antibody recognition (BAR) is an antibody-based approach for mapping proximal protein interactions in cells. Here, we present a protocol to biotinylate and identify proximal proteins using BAR. We describe steps for defining proximity labeling reaction conditions, assessing enrichment using western blot, and sample preparation for mass spectroscopy analysis. We then detail procedures for data analysis and identifying proximal proteins. This approach differs from standard proximity labeling techniques, which rely on genetically engineered enzymes fused to the target protein. For complete details on the use and execution of this protocol, please refer to Rega et al.

Indexed as

AntibodiesBiotinylationProtein Interaction MappingProteinsHumansMass SpectrometryAntibodiesProteinscell biologyprotein biochemistryproteomics

Identifiers

PMID39798093
PMCPMC11969400

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.