Evidence map›Paper›PMID 39797736›Full record

ArticleNucleic acids research2025

Novel archaeal ribosome dimerization factor facilitating unique 30S-30S dimerization.

Ahmed H Hassan, Matyas Pinkas, Chiaki Yaeshima, Sonoko Ishino, Toshio Uchiumi, Kosuke Ito, Gabriel Demo

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ahmed H HassanCentral European Institute of Technology, Masaryk University, Kamenice 5, Brno 625 00, Czech Republic.
Matyas PinkasCentral European Institute of Technology, Masaryk University, Kamenice 5, Brno 625 00, Czech Republic.
Chiaki YaeshimaDepartment of Biology, Faculty of Science, Niigata University, 8050 Ikarashi 2-no-cho, Niigata 950-2181, Japan.
Sonoko IshinoDepartment of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, 744 Motooka Nishi-ku, Fukuoka 819-0395, Japan.
Toshio UchiumiDepartment of Biology, Faculty of Science, Niigata University, 8050 Ikarashi 2-no-cho, Niigata 950-2181, Japan.ORCID 0000-0002-0001-4344
Kosuke ItoDepartment of Biology, Faculty of Science, Niigata University, 8050 Ikarashi 2-no-cho, Niigata 950-2181, Japan.
Gabriel DemoCentral European Institute of Technology, Masaryk University, Kamenice 5, Brno 625 00, Czech Republic.ORCID 0000-0002-5472-9249

Funding

European Union - Next Generation EUMEYS CRNational Institute of Virology and Bacteriology LX22NPO5103The Japan Society 15K06964The Uchida Energy Science Promotion Foundation R04-1-019
6 · The paper itself

Abstract

Protein synthesis (translation) consumes a substantial proportion of cellular resources, prompting specialized mechanisms to reduce translation under adverse conditions. Ribosome inactivation often involves ribosome-interacting proteins. In both bacteria and eukaryotes, various ribosome-interacting proteins facilitate ribosome dimerization or hibernation, and/or prevent ribosomal subunits from associating, enabling the organisms to adapt to stress. Despite extensive studies on bacteria and eukaryotes, understanding factor-mediated ribosome dimerization or anti-association in archaea remains elusive. Here, we present cryo-electron microscopy structures of an archaeal 30S dimer complexed with an archaeal ribosome dimerization factor (designated aRDF), from Pyrococcus furiosus, resolved at a resolution of 3.2 Å. The complex features two 30S subunits stabilized by aRDF homodimers in a unique head-to-body architecture, which differs from the disome architecture observed during hibernation in bacteria and eukaryotes. aRDF interacts directly with eS32 ribosomal protein, which is essential for subunit association. The binding mode of aRDF elucidates its anti-association properties, which prevent the assembly of archaeal 70S ribosomes.

Indexed as

Archaeal ProteinsPyrococcus furiosusRibosomal ProteinsRibosomesRibosome Subunits, Small, ArchaealCryoelectron MicroscopyDimerizationModels, MolecularProtein BindingProtein MultimerizationArchaeal ProteinsRibosomal Proteins

Identifiers

PMID39797736
PMCPMC11724365

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.