Evidence map›Paper›PMID 39795974›Full record

ArticleInternational journal of molecular sciences2024

In Silico Analysis Revealed Marco (SR-A6) and Abca1/2 as Potential Regulators of Lipid Metabolism in M1 Macrophage Hysteresis.

Yubo Zhang, Wenbo Yang, Yutaro Kumagai, Martin Loza, Yitao Yang, Sung-Joon Park, Kenta Nakai

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yubo ZhangDepartment of Computational Biology and Medical Science, The University of Tokyo, Tokyo 108-8639, Japan.
Wenbo YangDepartment of Computational Biology and Medical Science, The University of Tokyo, Tokyo 108-8639, Japan.
Yutaro KumagaiDepartment of Life Science and Biotechnology, National Institute of Advanced Industrial Science and Technology, Tokyo 305-0044, Japan.
Martin LozaHuman Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo 108-8639, Japan.ORCID 0000-0002-3342-2643
Yitao YangDepartment of Computational Biology and Medical Science, The University of Tokyo, Tokyo 108-8639, Japan.
Sung-Joon ParkHuman Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo 108-8639, Japan.ORCID 0000-0002-1774-9590
Kenta NakaiDepartment of Computational Biology and Medical Science, The University of Tokyo, Tokyo 108-8639, Japan.ORCID 0000-0002-8721-8883

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Macrophages undergo polarization, resulting in distinct phenotypes. These transitions, including de-/repolarization, lead to hysteresis, where cells retain genetic and epigenetic signatures of previous states, influencing macrophage function. We previously identified a set of interferon-stimulated genes (ISGs) associated with high lipid levels in macrophages that exhibited hysteresis following M1 polarization, suggesting potential alterations in lipid metabolism. In this study, we applied weighted gene co-expression network analysis (WGCNA) and conducted comparative analyses on 162 RNA-seq samples from de-/repolarized and lipid-loaded macrophages, followed by functional exploration. Our results demonstrate that during M1 hysteresis, the sustained high expression of Marco (SR-A6) enhances lipid uptake, while the suppression of Abca1/2 reduces lipid efflux, collectively leading to elevated intracellular lipid levels. This accumulation may compensate for reduced cholesterol biosynthesis and provide energy for sustained inflammatory responses and interferon signaling. Our findings elucidate the relationship between M1 hysteresis and lipid metabolism, contributing to understanding the underlying mechanisms of macrophage hysteresis.

Indexed as

ATP Binding Cassette Transporter 1Lipid MetabolismMacrophagesAnimalsCholesterolComputer SimulationGene Expression RegulationGene Regulatory NetworksHumansMiceATP Binding Cassette Transporter 1Cholesterolinnate immune memorymacrophage hysteresismacrophage lipid metabolismmacrophage polarizationmacrophage reprogramming

Identifiers

PMID39795974
PMCPMC11719740

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.