Evidence map›Paper›PMID 39794832›Full record

ArticleVirology journal2025

A new approach for detecting HPV DNA in cervical swabs: comparison of nucleic acid extraction with direct PCR.

Fatih Çubuk, Muhammet Çağrı Yıldız, Fikrican Balcı, Ahmet İrgin, Savaş Aşkın, Ekrem Sağtaş, Sedat Kaygusuz

Abstract readComparative StudyEvaluation Study
In one paragraph

Article in Virology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Human Papillomavirus: An Old New History.Pathogens (Basel, Switzerland) · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Fatih ÇubukNational HPV Laboratory, Department of National Reference Laboratories and Biological Products, Public Health General Directorate, Ministry of Health, Ankara, Türkiye, Turkey.ORCID 0000-0002-8976-7691
Muhammet Çağrı YıldızNational HPV Laboratory, Department of National Reference Laboratories and Biological Products, Public Health General Directorate, Ministry of Health, Ankara, Türkiye, Turkey.ORCID 0000-0002-5687-3340
Fikrican BalcıPharmaline Sağlık Hizmetleri San. Tic. A.Ş, Ankara, Türkiye, Turkey. fikricanbalci@gmail.com.ORCID 0000-0001-6530-322X
Ahmet İrginNational HPV Laboratory, Department of National Reference Laboratories and Biological Products, Public Health General Directorate, Ministry of Health, Ankara, Türkiye, Turkey.ORCID 0009-0009-3628-5160
Savaş AşkınNational HPV Laboratory, Department of National Reference Laboratories and Biological Products, Public Health General Directorate, Ministry of Health, Ankara, Türkiye, Turkey.ORCID 0009-0008-1625-1484
Ekrem SağtaşDepartment of National Reference Laboratories and Biological Products, Public Health General Directorate, Ministry of Health, Ankara, Türkiye, Turkey.ORCID 0009-0005-3002-6177
Sedat KaygusuzPublic Health General Directorate, Ministry of Health, Ankara, Türkiye, Turkey.ORCID 0000-0003-3245-6582

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAlmost all cases of cervical cancer are associated with persistent high-risk HPV infection. WHO prioritizes primary HPV testing for cervical cancer screening. Cervical cancer screening programs require the ability to process a large number of samples in a simple and standardized manner and obtain reliable results. The workload, time, and cost associated with the number of samples to be processed encourage the development of alternative methods to the traditional nucleic acid extraction method for population-based screening. In this study, we aimed to compare the performance of a commercial pre-denaturation solution with nucleic acid extraction in HPV DNA detection by PCR in cervical swab samples.

methodsThe study was designed in two phases: an experimental phase and a clinical phase. A total of 1200 cervical swabs were included in the clinical phase of the study. Positive results were obtained in 143 (11.9%) samples by nucleic acid extraction and 137 (11.4%) samples by PharmaDirect. Discordant results were detected in 28 (2.3%) samples.

resultsPharmaDirect provided 88.1% sensitivity compared to nucleic acid extraction. PharmaDirect provided high sensitivity for HPV genotype 16 (92.3%) and relatively limited sensitivity for mixed genotype infections (73.7%).

conclusionThis study demonstrates the potential of an alternative commercial pre-denaturation product that does not require nucleic acid extraction for HPV DNA detection in cervical swab samples. Such approaches may represent a useful alternative for population-based screening studies.

trial registrationNot applicable.

Indexed as

Cervix UteriDNA, ViralPapillomaviridaePapillomavirus InfectionsPolymerase Chain ReactionSpecimen HandlingAdultEarly Detection of CancerFemaleHumansMiddle AgedSensitivity and SpecificityUterine Cervical NeoplasmsDNA, ViralCervical cancer screeningHPVHPV DNAPCRPre-denaturationSensitivity

Identifiers

PMID39794832
PMCPMC11724592

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.