Evidence map›Paper›PMID 39793042›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Mechanism-guided engineering of a minimal biological particle for genome editing.

Wayne Ngo, Julia Peukes, Alisha Baldwin, Zhiwei Wayne Xue, Sidney Hwang, Robert R Stickels, Zhi Lin, Ansuman T Satpathy, James A Wells, Randy Schekman and 2 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Programming T cells for intercellular genome editing.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Advances in Engineered Virus-Like Particles for Genome Editing and Therapy.BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy · 2026
    Review
  11. Review
  12. Article
  13. Article
  14. Amplified genome editing bybioRxiv : the preprint server for biology · 2026
    Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Wayne Ngo *Innovative Genomics Institute, University of California, Berkeley, CA 94720.ORCID 0000-0002-5755-2303
Julia Peukes *California Institute for Quantitative Biosciences, University of California, Berkeley, CA 94158.ORCID 0000-0001-8560-7407
Alisha BaldwinInnovative Genomics Institute, University of California, Berkeley, CA 94720.
Zhiwei Wayne XueInnovative Genomics Institute, University of California, Berkeley, CA 94720.ORCID 0009-0008-7846-6616
Sidney HwangDepartment of Pathology, Stanford University, Stanford, CA 94304.
Robert R StickelsDepartment of Pathology, Stanford University, Stanford, CA 94304.ORCID 0000-0003-4326-4084
Zhi LinDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.ORCID 0000-0001-6662-7330
Ansuman T SatpathyDepartment of Pathology, Stanford University, Stanford, CA 94304.
James A WellsDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.ORCID 0000-0001-8267-5519
Randy SchekmanDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.ORCID 0000-0001-8615-6409
Eva NogalesCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, CA 94158.ORCID 0000-0001-9816-3681
Jennifer A DoudnaInnovative Genomics Institute, University of California, Berkeley, CA 94720.ORCID 0000-0001-9161-999X

Funding

Project 3U54AI170792 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Nevan J Krogan · 2022 to 2026
$35.7M
New protein engineering-based tools and technologies for characterizing cell surface proteolysis in cancer cells for novel neo-epitope biomarkers and drug targetsR01CA248323 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JAMES A WELLS · 2020 to 2026
$2.6M
Targeted Delivery of Cas9 to Lung Epithelial Cells using Enveloped Delivery VehiclesR21HL173710 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI DOUDNA, JENNIFER A · 2024 to 2025
$520k
Canadian Government | Natural Sciences and Engineering Research Council of Canada (NSERC) PDF-578176-2023DOE | NNSA | Lawrence Livermore National Laboratory (LLNL) DE-AC52-07NA27344European Molecular Biology Organization (EMBO) ALTF 1031-2021HHS | National Institutes of Health (NIH) 1R01CA248323-01HHS | NIH | National Heart, Lung, and Blood Institute (NHLBI) 1R21HL173710-01NCI NIH HHS R01 CA248323NHLBI NIH HHS R21 HL173710NIAID NIH HHS U54 AI170792
6 · The paper itself

Abstract

The widespread application of genome editing to treat and cure disease requires the delivery of genome editors into the nucleus of target cells. Enveloped delivery vehicles (EDVs) are engineered virally derived particles capable of packaging and delivering CRISPR-Cas9 ribonucleoproteins (RNPs). However, the presence of lentiviral genome encapsulation and replication proteins in EDVs has obscured the underlying delivery mechanism and precluded particle optimization. Here, we show that Cas9 RNP nuclear delivery is independent of the native lentiviral capsid structure. Instead, EDV-mediated genome editing activity corresponds directly to the number of nuclear localization sequences on the Cas9 enzyme. EDV structural analysis using cryo-electron tomography and small molecule inhibitors guided the removal of ~80% of viral residues, creating a minimal EDV (miniEDV) that retains full RNP delivery capability. MiniEDVs are 25% smaller yet package equivalent amounts of Cas9 RNPs relative to the original EDVs and demonstrated increased editing in cell lines and therapeutically relevant primary human T cells. These results show that virally derived particles can be streamlined to create efficacious genome editing delivery vehicles with simpler production and manufacturing.

Indexed as

CRISPR-Cas SystemsGene EditingCRISPR-Associated Protein 9Genetic VectorsHEK293 CellsHumansLentivirusRibonucleoproteinsCRISPR-Associated Protein 9Ribonucleoproteinsdeliverygenome editingviral-like particles

Identifiers

PMID39793042
PMCPMC11725915

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.