Evidence map›Paper›PMID 39789383›Full record

ArticleJournal of cellular and molecular medicine2025

Autophagy Associated Genes (ARGs) -Based Predictive Model AIDPS for Prostate Cancer.

Zhiyi Zhao, Yongjin Yang, Zhou Sun, LianMing Fan, Lingyun Liu

Abstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Zhiyi ZhaoDepartment of Andrology, The First Hospital of Jilin University, Changchun, China.ORCID 0009-0002-5209-2966
Yongjin YangDepartment of Urology, China-Japan Union Hospital of Jilin University, Changchun, China.
Zhou SunDepartment of Urology, China-Japan Union Hospital of Jilin University, Changchun, China.
LianMing FanDepartment of Urology, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, China.
Lingyun LiuDepartment of Andrology, The First Hospital of Jilin University, Changchun, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prostate cancer (PCa) is one of the most common cancers in men worldwide. Autophagy-related genes (ARGs) may play an important role in various biological processes of PCa. The aim of this study was to identify and evaluate autophagy-related features to predict clinical outcomes in patients with PCa. Single-cell sequencing data and RNA sequencing data was included from public GEO and TCGA databases. Cells were clustered and annotated by dimension reduction cluster analysis. Epithelial cells, T cells and fibroblasts were isolated to explore their heterogeneity. Autophagy-related genes were obtained from the HADb database. Survival analysis was conducted by K-M curve, and prognostic risk model was established using 101 machine learning algorithms. In addition, we performed gene colocalisation analysis and Mendelian randomisation analysis. Univariate Cox analysis was used to screen out prognostic genes from DEGs and ARGs in each dataset. Risk model was generated by artificial intelligence-derived prognostic signature (AIDPS), which showed better prognostic performance in every dataset than other published models for PCa. The disease-free period (DFS) of patients in the high-risk group was significantly worse than that in the low-risk group (all p < 0.05). The best model is the Ridge (C-index 0.726). We found significant differences in IC50 values of the Dactinomycin_1811, Dactolisib_1057, Luminespib_1559 and Paclitaxel_1080 between groups. In SNP sites rs2743987 and rs7768988, there was a significant correlation between prostate hyperplasia and prostate cancer. Our ARG-based predictive model AIDPS is a reliable and effective tool for prognosis and treatment of prostate cancer.

Indexed as

AutophagyGene Expression Regulation, NeoplasticProstatic NeoplasmsBiomarkers, TumorGene Expression ProfilingHumansMachine LearningMalePrognosisBiomarkers, TumorAIDPSAutophagyMendelian RandomizationPrognosisProstate cancer

Identifiers

PMID39789383
PMCPMC11717666

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.