Evidence map›Paper›PMID 39789232›Full record

ArticleScientific reports2025

Mesoscale heterogeneity is a critical determinant for spiral pattern formation in developing social amoeba.

Taishi Kakizuka, Hidenori Nakaoka, Yusuke Hara, Aya Ichiraku, Yoshiyuki Arai, Hiroya Itoga, Shuichi Onami, Taro Ichimura, Takeharu Nagai, Kazuki Horikawa

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Taishi Kakizuka *Department of Biomolecular Science and Engineering, SANKEN, Osaka University, Mihogaoka 8-1, Ibaraki, 567-0047, Osaka, Japan.
Hidenori Nakaoka *Department of Optical Imaging, Advanced Research Promotion Center, Tokushima University, 3-18-15 Kuramoto-cho, Tokushima City, 770-8503, Tokushima, Japan.
Yusuke Hara *Department of Optical Imaging, Advanced Research Promotion Center, Tokushima University, 3-18-15 Kuramoto-cho, Tokushima City, 770-8503, Tokushima, Japan.
Aya IchirakuDepartment of Optical Imaging, Advanced Research Promotion Center, Tokushima University, 3-18-15 Kuramoto-cho, Tokushima City, 770-8503, Tokushima, Japan.
Yoshiyuki AraiDepartment of Biomolecular Science and Engineering, SANKEN, Osaka University, Mihogaoka 8-1, Ibaraki, 567-0047, Osaka, Japan.
Hiroya ItogaLaboratory for Developmental Dynamics, RIKEN Center for Biosystems Dynamics Research, 2-2-3 Minatojima-minamimachi, Kobe, 650-0047, Japan.
Shuichi OnamiInstitute for Open and Transdisciplinary Research Initiatives, Osaka University, Yamadaoka 2-1, Suita, 565-0871, Osaka, Japan.
Taro IchimuraInstitute for Open and Transdisciplinary Research Initiatives, Osaka University, Yamadaoka 2-1, Suita, 565-0871, Osaka, Japan.
Takeharu NagaiDepartment of Biomolecular Science and Engineering, SANKEN, Osaka University, Mihogaoka 8-1, Ibaraki, 567-0047, Osaka, Japan. ng1@sanken.osaka-u.ac.jp.
Kazuki HorikawaInstitute for Open and Transdisciplinary Research Initiatives, Osaka University, Yamadaoka 2-1, Suita, 565-0871, Osaka, Japan. horikawa.kazuki@tokushima-u.ac.jp.

Funding

Grant-in-Aid for Scientific Research on Innovative Areas 18H05415
6 · The paper itself

Abstract

Heterogeneity is a critical determinant for multicellular pattern formation. Although the importance of microscale and macroscale heterogeneity at the single-cell and whole-system levels, respectively, has been well accepted, the presence and functions of mesoscale heterogeneity, such as cell clusters with distinct properties, have been poorly recognized. We investigated the biological importance of mesoscale heterogeneity in signal-relaying abilities (excitability) in the self-organization of spiral waves of intercellular communications by studying the self-organized pattern formation in a population of Dictyostelium discoideum cells, a classical signal-relaying system model. By utilizing pulse-count analysis to evaluate cellular excitability, we successfully visualized the development of mesoscale heterogeneity in excitability, whose spatial scale was comparably large to that of the traveling waves of intercellular communication. Together with perturbation experiments, our detailed analysis of the structural change in mesoscale heterogeneity and associated wave dynamics demonstrated the functional importance of mesoscale heterogeneity in generating the spiral wave pattern, whose experimental observations were first realized. We propose that mesoscale heterogeneity, in addition to microscale and macroscale heterogeneities, is a critical determinant of diverse multicellular pattern formations.

Indexed as

DictyosteliumCell CommunicationModels, BiologicalSignal Transduction

Identifiers

PMID39789232
PMCPMC11717926

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.