Evidence map›Paper›PMID 39789182›Full record

ArticleNature cancer2025

Immunogenomic determinants of exceptional response to immune checkpoint inhibition in renal cell carcinoma.

Tejas Jammihal, Renee Maria Saliby, Chris Labaki, Hanna Soulati, Juan Gallegos, Arnau Peris, Dustin McCurry, Chunlei Yu, Valisha Shah, Deepak Poduval and 19 more

Abstract read
In one paragraph

Article in Nature cancer, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Tejas Jammihal *Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-4614-1266
Renee Maria Saliby *Lank Center for Genitourinary Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-9241-597X
Chris Labaki *Lank Center for Genitourinary Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-9584-8455
Hanna SoulatiYale Center of Cellular and Molecular Oncology, Yale School of Medicine, New Haven, CT, USA.
Juan GallegosDepartment of Hematopoietic Biology and Malignancy, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID http://orcid.org/0000-0001-9421-367X
Arnau PerisDepartment of Hematopoietic Biology and Malignancy, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Dustin McCurryDepartment of Hematopoietic Biology and Malignancy, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Chunlei YuDepartment of Hematopoietic Biology and Malignancy, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Valisha ShahLank Center for Genitourinary Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.
Deepak PoduvalYale Center of Cellular and Molecular Oncology, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-9899-3543
Talal El ZarifLank Center for Genitourinary Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-4507-2396
Nourhan El AhmarDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Yasmin Nabil LaimonDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0003-0848-9843
Marc EidLank Center for Genitourinary Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.
Aseman Bagheri SheshdehDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Katherine M KrajewskiDepartment of Radiology, Brigham and Women's Hospital, Boston, MA, USA.
Florian A BüttnerDr. Margarete Fischer-Bosch-Institut of Clinical Pharmacology, Stuttgart, Germany.ORCID http://orcid.org/0000-0002-0657-9522
Matthias SchwabDr. Margarete Fischer-Bosch-Institut of Clinical Pharmacology, Stuttgart, Germany.ORCID http://orcid.org/0000-0002-9984-075X
Daniel HengTom Baker Cancer Centre, University of Calgary, Calgary, Alberta, Canada.
Rafael C CasellasDepartment of Hematopoietic Biology and Malignancy, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID http://orcid.org/0000-0001-9282-2287
Kunal RaiDepartment of Genomic Medicine, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID http://orcid.org/0000-0003-2321-6894
Niki M Zacharias MillwardDepartment of Urology, Division of Surgery, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Pavlos MsaouelDepartment of Genitourinary Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID http://orcid.org/0000-0001-6505-8308
Jose KaramDepartment of Urology, Division of Surgery, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID http://orcid.org/0000-0001-7697-9591
Sabina SignorettiDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-5000-9105
Eliezer Van AllenLank Center for Genitourinary Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-0201-4444
Toni K ChoueiriLank Center for Genitourinary Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA. toni_choueiri@dfci.harvard.edu.ORCID http://orcid.org/0000-0002-9201-3217
David A BraunYale Center of Cellular and Molecular Oncology, Yale School of Medicine, New Haven, CT, USA. david.braun@yale.edu.ORCID http://orcid.org/0000-0003-4543-5553
Sachet A ShuklaDepartment of Hematopoietic Biology and Malignancy, The University of Texas MD Anderson Cancer Center, Houston, TX, USA. SAShukla@mdanderson.org.ORCID http://orcid.org/0000-0003-2445-3584

Funding

VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI JENNIFER W MACK · 1985 to 2026
$330.6M
Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI MEGAN C KING · 1985 to 2026
$85.0M
Treating the P13-Kinase/AKTP50CA101942 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI David McDermott · 2003 to 2026
$53.4M
Tumor and immune determinants of effective anti-tumor immunity in renal cell carcinomaR37CA279822 · NCI · YALE UNIVERSITY · PI David Braun · 2023 to 2026
$2.6M
Cancer Prevention and Research Institute of Texas (Cancer Prevention Research Institute of Texas) RR220009Dana-Farber/Harvard Cancer Center (DF/HCC) 2P50CA101942-16Deutsche Forschungsgemeinschaft (German Research Foundation) EXC 2180 - 390900677NCI NIH HHS P30 CA006516NCI NIH HHS P30 CA016359NCI NIH HHS P50 CA101942NCI NIH HHS R37 CA279822U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) 5P30CA006516-56
6 · The paper itself

Abstract

Immune checkpoint inhibitors can lead to 'exceptional', durable responses in a subset of persons. However, the molecular basis of exceptional response (ER) to immunotherapy in metastatic clear cell renal cell carcinoma (mccRCC) has not been well characterized. Here we analyzed pretherapy genomic and transcriptomic data in treatment-naive persons with mccRCC treated with standard-of-care immunotherapies: (1) combination of programmed cell death protein and ligand 1 (PD1/PDL1) and cytotoxic T lymphocyte-associated protein 4 inhibitors (IO/IO) or (2) combination of PD1/PDL1 and vascular endothelial growth factor (VEGF) receptor inhibitors (IO/VEGF). In the IO/IO cohort, clonal neoantigen load was significantly higher in persons with ER. In the IO/VEGF cohort, ER participants displayed strong enrichment of B cell receptor signaling-related pathways, tertiary lymphoid structure (TLS) signatures and evidence of increased metabolic activity. Our results suggest that ER may be related to clonal neoantigen-driven cytotoxic T cell responses and TLS formation in tumor microenvironments. Therapeutic combinations that elicit both T cell-directed and B cell-directed antitumor immunity may be important to achieve exceptional benefit to IO-based treatment in ccRCC.

Indexed as

Carcinoma, Renal CellImmune Checkpoint InhibitorsKidney NeoplasmsAgedB7-H1 AntigenFemaleHumansImmunotherapyMaleMiddle AgedProgrammed Cell Death 1 ReceptorTumor MicroenvironmentB7-H1 AntigenCD274 protein, humanImmune Checkpoint InhibitorsPDCD1 protein, humanProgrammed Cell Death 1 Receptor

Identifiers

PMID39789182
PMCPMC12121501

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.