Evidence map›Paper›PMID 39789086›Full record

ArticleScientific reports2025

Evaluating Xanthomonas oryzae pv. oryzae (Xoo) infection dynamics in rice for distribution routes and environmental reservoirs by molecular approaches.

Onchira Ritbamrung, Phithak Inthima, Kumrop Ratanasut, Kawee Sujipuli, Tepsuda Rungrat, Kittisak Buddhachat

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Pathogens (Basel, Switzerland) · 2026
    Review
  5. Article
  6. Mechanism ofFrontiers in microbiology · 2026
    Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Onchira RitbamrungDepartment of Biology, Faculty of Science, Naresuan University, Phitsanulok, Thailand.
Phithak InthimaDepartment of Biology, Faculty of Science, Naresuan University, Phitsanulok, Thailand.
Kumrop RatanasutCenter of Excellence in Research for Agricultural Biotechnology, Naresuan University, Phitsanulok, Thailand.
Kawee SujipuliCenter of Excellence in Research for Agricultural Biotechnology, Naresuan University, Phitsanulok, Thailand.
Tepsuda RungratCenter of Excellence in Research for Agricultural Biotechnology, Naresuan University, Phitsanulok, Thailand.
Kittisak BuddhachatDepartment of Biology, Faculty of Science, Naresuan University, Phitsanulok, Thailand. kittisakbu@nu.ac.th.

Funding

Global and Frontier Research University Fund, Naresuan University, Thailand R2566C051Naresuan University (NU), Thailand and the National Science, Research and Innovation Fund (NSRF), Thailand R2566B027
6 · The paper itself

Abstract

Xanthomonas oryzae pv. oryzae (Xoo) is a bacterial pathogen responsible for bacterial leaf blight (BLB) in rice, which can result in significant yield losses of up to 70%. A study evaluated the spread of Xoo in rice fields using environmental samples and employed colorimetric loop-mediated amplification (cLAMP) and PCR for detection. Quantitative PCR (qPCR) was used to measure infection levels. The research compared infection severity between a susceptible rice variety, Phitsanulok 2 (PSL2), and a resistant variety, PSL2-Xa21. Results showed that Xoo infection decreased from the leaves to the roots, but the bacteria persisted in soil and water for up to 12 and 6 weeks, respectively. The cLAMP assay, with the LpXoo4009 primer, effectively detected Xoo at low concentrations in both soil and water. Additionally, common grasses found in rice fields, such as Eriochloa procera, Echinochloa crus-galli and Chloris barbata were identified as temporary reservoirs for Xoo, facilitating its spread. The Xoo pathogen is distributed from infected leaves to roots and then from roots to the soil and nearby water. Grasses in the fields contribute to the perpetuation of the infection cycle serving as potential reservoirs that maintain the pathogen's presence in the environment.

Indexed as

OryzaPlant DiseasesPlant LeavesPlant RootsSoil MicrobiologyXanthomonasBacterial leaf blight (BLB)Colorimetric loop-mediated isothermal amplification (cLAMP)Environmental DNA (eDNA)GrassXoo

Identifiers

PMID39789086
PMCPMC11718276

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.