Evidence map›Paper›PMID 39788966›Full record

ArticleNature communications2025

Molecular logic for cellular specializations that initiate the auditory parallel processing pathways.

Junzhan Jing, Ming Hu, Tenzin Ngodup, Qianqian Ma, Shu-Ning Natalie Lau, M Cecilia Ljungberg, Matthew J McGinley, Laurence O Trussell, Xiaolong Jiang

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Junzhan Jing *Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, TX, USA.
Ming Hu *Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, TX, USA.ORCID http://orcid.org/0000-0002-5254-5315
Tenzin Ngodup *Oregon Hearing Research Center and Vollum Institute, Oregon Health and Science University, Portland, OR, USA.
Qianqian MaJan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, TX, USA.
Shu-Ning Natalie LauJan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, TX, USA.
M Cecilia LjungbergJan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, TX, USA.
Matthew J McGinleyJan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, TX, USA. matthew.mcginley@bcm.edu.ORCID http://orcid.org/0000-0002-6516-9670
Laurence O TrussellOregon Hearing Research Center and Vollum Institute, Oregon Health and Science University, Portland, OR, USA. trussell@ohsu.edu.
Xiaolong JiangJan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, TX, USA. xiaolonj@bcm.edu.ORCID http://orcid.org/0000-0001-8066-1383

Funding

VISION RESEARCH CENTERP30EY002520 · NEI · BAYLOR COLLEGE OF MEDICINE · PI Samuel M Wu · 1985 to 2026
$14.8M
Synaptic mechanisms in the auditory system (Administrative Supplement)R01DC004450 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI LAURENCE O TRUSSELL · 1999 to 2026
$10.6M
Preclinical and Clincial OutcomesP50HD103555 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI Sandesh Chakravarthy Sreenath Nagamani, David Loren Nelson · 2020 to 2026
$9.9M
Single-Cell Computation in Auditory Brainstem and its Impact on Cortical Coding and BehaviorR01NS118402 · NINDS · HARVARD MEDICAL SCHOOL · PI GOLDING, NACE L, GOODRICH, LISA · 2020 to 2024
$4.7M
Regulation of axonal and synaptic signaling in interneuron (supplement)R35NS116798 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI LAURENCE O TRUSSELL · 2020 to 2026
$4.1M
Elucidating neural circuits and pupil readouts of motivated effortful listeningR01DC017797 · NIDCD · BAYLOR COLLEGE OF MEDICINE · PI MCGINLEY, MATTHEW J · 2019 to 2023
$2.4M
Development of aberrant cortical interneuron circuitry in genetic mouse models of absence epilepsyR01NS110767 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI JIANG, XIAOLONG, NOEBELS, JEFFREY · 2020 to 2024
$2.2M
Deciphering the building blocks of the macaque prefrontal cortical microcircuitR01MH120404 · NIMH · BAYLOR COLLEGE OF MEDICINE · PI JIANG, XIAOLONG · 2019 to 2023
$2.0M
Deciphering the transcriptomic signatures, physiology, and connectivity of the specialized morphotypes in macaque insular cortexR01MH122169 · NIMH · BAYLOR COLLEGE OF MEDICINE · PI JIANG, XIAOLONG · 2020 to 2024
$1.2M
Tecan EVO GenePaint robotS10OD016167 · OD · BAYLOR COLLEGE OF MEDICINE · PI LJUNGBERG, CECILIA · 2013 to 2013
$215k
NEI NIH HHS P30 EY002520NICHD NIH HHS P50 HD103555NIDCD NIH HHS R01 DC004450NIDCD NIH HHS R01 DC017797NIH HHS S10 OD016167NIMH NIH HHS R01 MH120404NIMH NIH HHS R01 MH122169NINDS NIH HHS R01 NS110767NINDS NIH HHS R01 NS118402NINDS NIH HHS R35 NS116798U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) R01MH122169; R01MH120404U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R01NS110767U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R35NS116798U.S. Department of Health & Human Services | NIH | National Institute on Deafness and Other Communication Disorders (NIDCD) R01DC004450U.S. Department of Health & Human Services | NIH | National Institute on Deafness and Other Communication Disorders (NIDCD) R01DC017797
6 · The paper itself

Abstract

The cochlear nuclear complex (CN), the starting point for all central auditory processing, encompasses a suite of neuronal cell types highly specialized for neural coding of acoustic signals. However, the molecular logic governing these specializations remains unknown. By combining single-nucleus RNA sequencing and Patch-seq analysis, we reveal a set of transcriptionally distinct cell populations encompassing all previously observed types and discover multiple hitherto unknown subtypes with anatomical and physiological identity. The resulting comprehensive cell-type taxonomy reconciles anatomical position, morphological, physiological, and molecular criteria, enabling the determination of the molecular basis of the specialized cellular phenotypes in the CN. In particular, CN cell-type identity is encoded in a transcriptional architecture that orchestrates functionally congruent expression across a small set of gene families to customize projection patterns, input-output synaptic communication, and biophysical features required for encoding distinct aspects of acoustic signals. This high-resolution account of cellular heterogeneity from the molecular to the circuit level reveals the molecular logic driving cellular specializations, thus enabling the genetic dissection of auditory processing and hearing disorders with a high specificity.

Indexed as

Auditory PathwaysCochlear NucleusAnimalsAuditory PerceptionFemaleMaleMiceNeuronsSingle-Cell Analysis

Identifiers

PMID39788966
PMCPMC11717940

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.