Evidence map›Paper›PMID 39786990›Full record

ArticleCell reports2025

Human TRMT1 and TRMT1L paralogs ensure the proper modification state, stability, and function of tRNAs.

Kejia Zhang, Aidan C Manning, Jenna M Lentini, Jonathan Howard, Felix Dalwigk, Reza Maroofian, Stephanie Efthymiou, Patricia Chan, Sergei I Eliseev, Zi Yang and 7 more

Abstract read
In one paragraph

Article in Cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Thermophysical Properties of a tRNA Isodecoder.The journal of physical chemistry. B · 2026
    Article
  3. TRMT1-mediated tRNA mCell death & disease · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. The Landscape of tRNA Modifications in Archaea.bioRxiv : the preprint server for biology · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. TRMT1L-catalyzed mCell reports · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Kejia ZhangDepartment of Biology, Center for RNA Biology, University of Rochester, Rochester, NY, USA.
Aidan C ManningDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA.
Jenna M LentiniDepartment of Biology, Center for RNA Biology, University of Rochester, Rochester, NY, USA.
Jonathan HowardDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA.
Felix DalwigkInstitute of Pharmaceutical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 9, 60438 Frankfurt, Germany.
Reza MaroofianDepartment of Neuromuscular Disorders, UCL Queen Square Institute of Neurology, WC1N 3BG London, UK.
Stephanie EfthymiouDepartment of Neuromuscular Disorders, UCL Queen Square Institute of Neurology, WC1N 3BG London, UK.
Patricia ChanDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA.
Sergei I EliseevDepartment of Biology, Center for RNA Biology, University of Rochester, Rochester, NY, USA.
Zi YangDepartment of Biology, Center for RNA Biology, University of Rochester, Rochester, NY, USA.
Hayley ChangDepartment of Biology, Center for RNA Biology, University of Rochester, Rochester, NY, USA.
Ehsan Ghayoor KarimianiDepartment of Neuromuscular Disorders, UCL Queen Square Institute of Neurology, WC1N 3BG London, UK.
Behnoosh BakhshoodehMashhad University of Medical Sciences, Mashhad, Razavi Khorasan Province 91778 99191, Iran.
Henry HouldenDepartment of Neuromuscular Disorders, UCL Queen Square Institute of Neurology, WC1N 3BG London, UK.
Stefanie M KaiserInstitute of Pharmaceutical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 9, 60438 Frankfurt, Germany.
Todd M LoweDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA.
Dragony FuDepartment of Biology, Center for RNA Biology, University of Rochester, Rochester, NY, USA. Electronic address: dragonyfu@rochester.edu.

Funding

A Unified Atlas of Dynamic tRNA FunctionR01HG006753 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI LOWE, TODD MICHAEL · 2012 to 2022
$4.6M
Molecular functions of the TRMT1 tRNA modification enzymeR01GM141038 · NIGMS · UNIVERSITY OF ROCHESTER · PI FU, DRAGONY · 2021 to 2024
$1.7M
Mechanism and functions of DALRD3-dependent tRNA modificationR01GM143145 · NIGMS · UNIVERSITY OF ROCHESTER · PI FU, DRAGONY · 2022 to 2025
$1.2M
Medical Research Council G0601943Medical Research Council MR/S005021/1Medical Research Council MR/S01165X/1NHGRI NIH HHS R01 HG006753NIGMS NIH HHS R01 GM141038NIGMS NIH HHS R01 GM143145Wellcome TrustWellcome Trust WT093205MAWellcome Trust WT104033AIA
6 · The paper itself

Abstract

The tRNA methyltransferase 1 (TRMT1) enzyme catalyzes the N2,N2-dimethylguanosine (m2,2G) modification in tRNAs. Intriguingly, vertebrates encode an additional tRNA methyltransferase 1-like (TRMT1L) paralog. Here, we use a comprehensive tRNA sequencing approach to decipher targets of human TRMT1 and TRMT1L. We find that TRMT1 methylates all known tRNAs containing guanosine at position 26, while TRMT1L represents the elusive enzyme catalyzing m2,2G at position 27 in tyrosine tRNAs. Surprisingly, TRMT1L is also necessary for maintaining 3-(3-amino-3-carboxypropyl)uridine (acp3U) modifications in a subset of tRNAs through a process that can be uncoupled from methyltransferase activity. We also demonstrate that tyrosine and serine tRNAs are dependent upon m2,2G modifications for their stability and function in translation. Notably, human patient cells with disease-associated TRMT1 variants exhibit reduced levels of tyrosine and serine tRNAs. These findings uncover unexpected roles for TRMT1 paralogs, decipher functions for m2,2G modifications, and pinpoint tRNAs dysregulated in human disorders caused by tRNA modification deficiency.

Indexed as

RNA, TransfertRNA MethyltransferasesGuanosineHEK293 CellsHumansMethylationRNA StabilityGuanosineRNA, TransfertRNA MethyltransferasesCP: Molecular biologyintellectual disabilitym2,2GparalogRNA modificationtranslationTrm1TRMT1TRMT1LtRNA

Identifiers

PMID39786990
PMCPMC11831618

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.