Evidence map›Paper›PMID 39786922›Full record

ArticleBiology open2024

The fission yeast SUMO-targeted ubiquitin ligase Slx8 functionally associates with clustered centromeres and the silent mating-type region at the nuclear periphery.

Shrena Chakraborty, Joanna Strachan, Kamila Schirmeisen, Laetitia Besse, Eve Mercier, Karine Fréon, Haidao Zhang, Ning Zhao, Elizabeth H Bayne, Sarah A E Lambert

Abstract read
In one paragraph

Article in Biology open, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Shrena ChakrabortyInstitut Curie, Université PSL, CNRS UMR3348, 91400 Orsay, France.ORCID 0000-0003-4558-0507
Joanna StrachanInstitute of Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3FF, UK.ORCID 0009-0009-2707-031X
Kamila SchirmeisenInstitut Curie, Université PSL, CNRS UMR3348, 91400 Orsay, France.ORCID 0000-0001-9670-232X
Laetitia BesseInstitut Curie, Université PSL, CNRS UAR2016, Inserm US43, Université Paris-Saclay, Multimodal Imaging Center, 91400 Orsay, France.ORCID 0000-0001-5031-652X
Eve MercierInstitut Curie, Université PSL, CNRS UMR3348, 91400 Orsay, France.ORCID 0000-0001-5621-2916
Karine FréonInstitut Curie, Université PSL, CNRS UMR3348, 91400 Orsay, France.ORCID 0000-0001-7853-078X
Haidao ZhangInstitute of Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3FF, UK.
Ning ZhaoInstitute of Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3FF, UK.
Elizabeth H BayneInstitute of Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3FF, UK.ORCID 0000-0001-8775-999X
Sarah A E LambertInstitut Curie, Université PSL, CNRS UMR3348, 91400 Orsay, France.ORCID 0000-0002-1403-3204

Funding

Agence Nationale de la Recherche ANR-19-CE12-0023-01Centre National de la Recherche ScientifiqueDarwin Trust of EdinburghInstitut CurieLeverhulme Trust RPG-2014-050Ligue Contre le Cancer EL2020LNCC/SalUniversity of EdinburghWellcome TrustWellcome Trust 202771/Z/16/Z
6 · The paper itself

Abstract

The SUMO-targeted ubiquitin ligase (STUbL) family is involved in multiple cellular processes via a wide range of mechanisms to maintain genome stability. One of the evolutionarily conserved functions of STUbL is to promote changes in the nuclear positioning of DNA lesions, targeting them to the nuclear periphery. In Schizossacharomyces pombe, the STUbL Slx8 is a regulator of SUMOylated proteins and promotes replication stress tolerance by counteracting the toxicity of SUMO conjugates. In order to study the dynamic dialectic between ubiquitinylation and SUMOylation in the nuclear space of the S. pombe genome, we analyzed Slx8 localization. Unexpectedly, we did not detect replication stress-induced Slx8 foci. However, we discovered that Slx8 forms a single nuclear focus, enriched at the nuclear periphery, which marks both clustered centromeres at the spindle pole body and the silent mating-type region. The formation of this single Slx8 focus requires the E3 SUMO ligase Pli1, poly-SUMOylation and the histone methyl transferase Clr4 that is responsible for the heterochromatin histone mark H3-K9 methylation. Finally, we established that Slx8 promotes centromere clustering and gene silencing at heterochromatin domains. Altogether, our data highlight evolutionarily conserved and functional relationships between STUbL and heterochromatin domains to promote gene silencing and nuclear organization.

Indexed as

CentromereSchizosaccharomycesSchizosaccharomyces pombe ProteinsSumoylationUbiquitin-Protein LigasesCell NucleusGenes, Mating Type, FungalProtein BindingSmall Ubiquitin-Related Modifier ProteinsSchizosaccharomyces pombe ProteinsSmall Ubiquitin-Related Modifier ProteinsUbiquitin-Protein LigasesCentromereGene silencingHeterochromatinSlx8SUMOSUMO-targeted ubiquitin ligase

Identifiers

PMID39786922
PMCPMC11708773

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.