Evidence map›Paper›PMID 39784355›Full record

ArticleJournal of materials chemistry. B2025

Multi-functional near-infrared fluorescent polymer dot-siRNA for gene expression regulation.

Di Sun, Blessing O Okosun, Yujie Xue, Kirati Tayutivutikul, Kaitlyn H Smith, Diane C Darland, Julia X Zhao

Abstract read
In one paragraph

Article in Journal of materials chemistry. B, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Di SunDepartment of Chemistry, University of North Dakota, Grand Forks, ND, 58202, USA. julia.zhao@und.edu.ORCID http://orcid.org/0000-0001-9039-1022
Blessing O OkosunDepartment of Biology, University of North Dakota, Grand Forks, ND, 58202, USA. diane.darland@und.edu.ORCID http://orcid.org/0009-0003-6247-3727
Yujie XueDepartment of Chemistry, University of North Dakota, Grand Forks, ND, 58202, USA. julia.zhao@und.edu.ORCID http://orcid.org/0009-0003-0705-3850
Kirati TayutivutikulDepartment of Chemistry, University of North Dakota, Grand Forks, ND, 58202, USA. julia.zhao@und.edu.ORCID http://orcid.org/0009-0006-1885-660X
Kaitlyn H SmithDepartment of Biology, University of North Dakota, Grand Forks, ND, 58202, USA. diane.darland@und.edu.ORCID http://orcid.org/0009-0004-0492-5948
Diane C DarlandDepartment of Biology, University of North Dakota, Grand Forks, ND, 58202, USA. diane.darland@und.edu.ORCID http://orcid.org/0000-0001-5567-1889
Julia X ZhaoDepartment of Chemistry, University of North Dakota, Grand Forks, ND, 58202, USA. julia.zhao@und.edu.ORCID http://orcid.org/0000-0002-9603-666X

Funding

The role of class IIa Hdac in regulating cell fate choice in early cortical development.P20GM104360 · NIGMS · UNIVERSITY OF NORTH DAKOTA · PI VAUGHAN, ROXANNE A · 2013 to 2023
$21.1M
Tracking and Evaluation CoreU54GM128729 · NIGMS · UNIVERSITY OF NORTH DAKOTA · PI BASSON, MARC D. · 2018 to 2022
$20.3M
Yersina perstis interactions with macrophagesP20GM113123 · NIGMS · UNIVERSITY OF NORTH DAKOTA · PI COMBS, COLIN K · 2016 to 2025
$19.9M
NIGMS NIH HHS P20 GM104360NIGMS NIH HHS P20 GM113123NIGMS NIH HHS U54 GM128729
6 · The paper itself

Abstract

Regulation of gene expression in eukaryotic cells is critical for cell survival, proliferation, and cell fate determination. Misregulation of gene expression can have substantial, negative consequences that result in disease or tissue dysfunction that can be targeted for therapeutic intervention. Several strategies to inhibit gene expression at the level of mRNA transcription and translation have been developed, such as anti-sense inhibition and CRISPR-Cas9 gene editing. However, these strategies have some limitations in terms of specificity, toxicity, and ease of use. We have designed a nanomaterials-based tool to inhibit gene expression in eukaryotic cells with a potential application in basic and biomedical research. At the heart of our rational design approach is a polymer dots (Pdots)-based nanoplatform that can provide a means to deliver gene-specific small interfering (siRNA) into cells while at the same time providing a visualization mechanism to determine which cells have taken up the siRNA. The Pdots that we designed and synthesized had an average size 64.25 ± 0.60 nm and a zeta potential that was +37.40 ± 8.28 mV. The Pdot-1 nmole Gapdh siRNA showed an average size of 82.27 ± 9.83 nm, with the zeta potential values determined to be -52.00 ± 6.05 mV in the HEPES buffer. Both Pdots and Pdot-siRNA displayed two emission peaks in the visible (588 nm) and near-infrared (NIR) emission range (775 nm). We treated primary cultures of mouse brain-derived microvascular cells with Pdot-Gapdh siRNA and observed uniform cellular uptake of the nanomaterial in the cells and reduced intensity of Gapdh immunolabeling. Our results highlight the potential application of Pdot-siRNA for gene expression targeting with simultaneous visual monitoring of Pdot-siRNA delivery. The simple design offers a flexible and novel strategy to inhibit a wide range of mRNA targets with minimal toxicity, high efficiency, and focused cell visualization.

Indexed as

Fluorescent DyesGene Expression RegulationPolymersQuantum DotsRNA, Small InterferingAnimalsHumansMiceParticle SizeFluorescent DyesPolymersRNA, Small Interfering

Identifiers

PMID39784355
PMCPMC11806943

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.