Evidence map›Paper›PMID 39781511›Full record

ArticleNAR genomics and bioinformatics2025

Whole-genome automated assembly pipeline for

Olusola Olagoke, Ammar Aziz, Lucile H Zhu, Timothy D Read, Deborah Dean

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in NAR genomics and bioinformatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Genome-wide association studies ofInfection and immunity · 2026
    Article
  3. Article
  4. Putative azithromycin resistance mutations inAntimicrobial agents and chemotherapy · 2026
    Article
  5. Population-based concordance ofMicrobiology spectrum · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Olusola OlagokeDepartments of Medicine and Pediatrics, Division of Infectious Diseases and Global Health, University of California San Francisco School of Medicine, 550 16th Street, 4th Floor Mission Hall, San Francisco, CA, 94158, USA.
Ammar AzizVictorian Infectious Diseases Reference Laboratory, 792 Elizabeth Street, Melbourne, Victoria, 3000, Australia.
Lucile H ZhuDepartment of Bioengineering, University of California San Francisco and Berkeley School of Engineering, 306 Stanley Hall, Berkeley, CA, 94720, USA.
Timothy D ReadDepartments of Medicine and Genetics, Division of Infectious Diseases, Emory University School of Medicine, 100 Woodruff Circle, Atlanta, GA, 30322, USA.ORCID 0000-0001-8966-9680
Deborah DeanDepartments of Medicine and Pediatrics, Division of Infectious Diseases and Global Health, University of California San Francisco School of Medicine, 550 16th Street, 4th Floor Mission Hall, San Francisco, CA, 94158, USA.ORCID 0000-0002-4490-1746

Funding

Natural History of C. trachomatis urogenital and rectal infectionsR01AI151075 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEAN, DEBORAH ANNE, READ, TIMOTHY D. · 2020 to 2024
$4.0M
Impact of ocular microbiome, immune response and Chlamydiae on trachoma following MDAR01AI158527 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEBORAH Anne DEAN, Timothy D. Read · 2022 to 2026
$4.0M
NIAID NIH HHS R01 AI151075NIAID NIH HHS R01 AI158527NIH HHS R01AI151075
6 · The paper itself

Abstract

Whole genome sequencing (WGS) is pivotal for the molecular characterization of

Indexed as

Chlamydia trachomatisGenome, BacterialPhylogenyWhole Genome SequencingChlamydia InfectionsHumansSoftware

Identifiers

PMID39781511
PMCPMC11704784

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.