Evidence map›Paper›PMID 39780917›Full record

ArticlePNAS nexus2024

Death and survival of gut CD4 T cells following HIV-1 infection ex vivo.

Kaylee L Mickens, Stephanie M Dillon, Kejun Guo, Ashley N Thompson, Bradley S Barrett, Cheyret Wood, Katerina Kechris, Mario L Santiago, Cara C Wilson

Abstract read
In one paragraph

Article in PNAS nexus, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Cytotoxic CD4Signal transduction and targeted therapy · 2026
    Review
  3. Review
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kaylee L MickensDivision of Infectious Diseases, Department of Medicine, University of Colorado School of Medicine, 12700 E 19th Ave, Mail Stop B168, Aurora, CO 80045, USA.ORCID https://orcid.org/0000-0003-2801-6234
Stephanie M DillonDivision of Infectious Diseases, Department of Medicine, University of Colorado School of Medicine, 12700 E 19th Ave, Mail Stop B168, Aurora, CO 80045, USA.ORCID https://orcid.org/0000-0003-0174-3263
Kejun GuoDivision of Infectious Diseases, Department of Medicine, University of Colorado School of Medicine, 12700 E 19th Ave, Mail Stop B168, Aurora, CO 80045, USA.ORCID https://orcid.org/0000-0003-1121-7603
Ashley N ThompsonDivision of Infectious Diseases, Department of Medicine, University of Colorado School of Medicine, 12700 E 19th Ave, Mail Stop B168, Aurora, CO 80045, USA.ORCID https://orcid.org/0009-0004-1483-5495
Bradley S BarrettDivision of Infectious Diseases, Department of Medicine, University of Colorado School of Medicine, 12700 E 19th Ave, Mail Stop B168, Aurora, CO 80045, USA.
Cheyret WoodDepartment of Biostatistics and Informatics, Center for Innovative Design and Analysis, 13001 E 17th Place, Mail Stop B119, University of Colorado School of Medicine, Aurora, CO 80045, USA.ORCID https://orcid.org/0000-0002-9418-4917
Katerina KechrisDepartment of Biostatistics and Informatics, Center for Innovative Design and Analysis, 13001 E 17th Place, Mail Stop B119, University of Colorado School of Medicine, Aurora, CO 80045, USA.ORCID https://orcid.org/0000-0002-3725-5459
Mario L SantiagoDivision of Infectious Diseases, Department of Medicine, University of Colorado School of Medicine, 12700 E 19th Ave, Mail Stop B168, Aurora, CO 80045, USA.ORCID https://orcid.org/0000-0001-7792-2706
Cara C WilsonDivision of Infectious Diseases, Department of Medicine, University of Colorado School of Medicine, 12700 E 19th Ave, Mail Stop B168, Aurora, CO 80045, USA.ORCID https://orcid.org/0000-0003-4399-2225

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Colorado Clinical and Translational Sciences Institute (CCTSI)UM1TR004399 · NCATS · UNIVERSITY OF COLORADO DENVER · PI JANINE A HIGGINS, RONALD J. SOKOL · 2023 to 2026
$30.7M
Role of Type I IFNs in Mucosal HIV-1 Immunity and PathogenesisR01AI134220 · NIAID · UNIVERSITY OF COLORADO DENVER · PI SANTIAGO, MARIO LUIS, WILSON, CARA C. · 2017 to 2021
$2.7M
Molecular Pathogenesis of Infectious DiseasesT32AI052066 · NIAID · UNIVERSITY OF COLORADO DENVER · PI VAN DYK, LINDA F. · 2002 to 2022
$2.3M
Mechanisms of HIV-associated Gut T Cell DepletionR01AI108404 · NIAID · UNIVERSITY OF COLORADO DENVER · PI WILSON, CARA C. · 2013 to 2017
$2.3M
CTSA Predoctoral T32 at University of Colorado DenverT32TR004367 · NCATS · UNIVERSITY OF COLORADO DENVER · PI Lisa Cicutto · 2023 to 2026
$1.5M
NCATS NIH HHS T32 TR004367NCATS NIH HHS UM1 TR004399NCI NIH HHS P30 CA046934NIAID NIH HHS R01 AI108404NIAID NIH HHS R01 AI134220NIAID NIH HHS T32 AI052066
6 · The paper itself

Abstract

The gastrointestinal tract is ground zero for the massive and sustained CD4 T cell depletion during acute HIV-1 infection. To date, the molecular mechanisms governing this fundamental pathogenic process remain unclear. HIV-1 infection in the gastrointestinal tract is associated with chronic inflammation due to a disrupted epithelial barrier that results in microbial translocation. Here, we utilized the lamina propria aggregate culture model to demonstrate that the profound induction of granzyme B by bacteria in primary gut CD4 T cells ex vivo significantly contributes to HIV-1-mediated CD4 T cell death. Counterintuitively, a substantial fraction of gut granzyme B+ CD4 T cells harboring high levels of HIV-1 infection survive via a pathway linked to CD120b/TNFR2. Our findings underscore previously undescribed mechanisms governing the death and survival of gut CD4 T cells during HIV-1 infection that could inform strategies to counter HIV-1 pathogenesis and persistence in this critical tissue compartment.

Indexed as

cytotoxic CD4+ T lymphocytesgranzyme Bgut immunologyHIV-1TNF response

Identifiers

PMID39780917
PMCPMC11707799

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.