Evidence map›Paper›PMID 39779942›Full record

ArticleNature cell biology2025

H3K36 methylation regulates cell plasticity and regeneration in the intestinal epithelium.

Alison R S Pashos, Anne R Meyer, Cameron Bussey-Sutton, Erin S O'Connor, Mariel Coradin, Marilyne Coulombe, Kent A Riemondy, Sanjana Potlapelly, Brian D Strahl, Gunnar C Hansson and 2 more

Abstract read
In one paragraph

Article in Nature cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Nuclei sense complex tissue shape and direct intestinal stem cell fate.bioRxiv : the preprint server for biology · 2025
    Article
  13. Review
  14. Article
  15. Tet1 safeguards lineage allocation in intestinal stem cells.bioRxiv : the preprint server for biology · 2025
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Alison R S PashosDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA.ORCID http://orcid.org/0000-0001-7072-5603
Anne R MeyerUniversity of Colorado Cancer Center, Anschutz Medical Campus, Aurora, CO, USA.
Cameron Bussey-SuttonDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Erin S O'ConnorDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA.
Mariel CoradinDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA.
Marilyne CoulombeUniversity of Colorado Cancer Center, Anschutz Medical Campus, Aurora, CO, USA.
Kent A RiemondyRNA Bioscience Initiative, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Sanjana PotlapellyDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA.
Brian D StrahlDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0002-4947-6259
Gunnar C HanssonDepartment of Medical Biochemistry and Cell Biology, University of Gothenburg, Gothenburg, Sweden.
Peter J DempseyUniversity of Colorado Cancer Center, Anschutz Medical Campus, Aurora, CO, USA. peter.dempsey@cuanschutz.edu.ORCID http://orcid.org/0000-0003-4151-799X
Justin BrumbaughDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA. justin.brumbaugh@colorado.edu.ORCID http://orcid.org/0000-0002-9605-2010

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
University of Colorado Anschutz Medical Campus DRCP30DK116073 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI LORI SUSSEL · 2020 to 2026
$10.8M
Mechanisms of chromatin and transcriptional regulationR35GM126900 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Brian D Strahl · 2018 to 2026
$5.5M
Predoctoral Training Program in Signaling and Cellular Regulation INCLUDE Down Syndrome SupplementT32GM142607 · NIGMS · UNIVERSITY OF COLORADO · PI Sabrina Leigh Spencer, Tin Tin Su · 2021 to 2026
$3.6M
DEFINING REGULATORY ROLES FOR HISTONE H3 METHYLATION IN DEVELOPMENTR35GM142884 · NIGMS · UNIVERSITY OF COLORADO · PI BRUMBAUGH, JUSTIN · 2021 to 2025
$2.1M
Epigenetic regulation of lineage specification in colon epithelial cellsF32DK135241 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI MEYER, ANNE R. · 2023 to 2025
$226k
Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) F32DK135241-01Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R35GM126900Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R35GM142884Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R35GM142884-02SFoundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) T32GM142607NCI NIH HHS P30 CA046934NIDDK NIH HHS F32 DK135241NIDDK NIH HHS P30 DK116073NIGMS NIH HHS R35 GM126900NIGMS NIH HHS R35 GM142884NIGMS NIH HHS T32 GM142607
6 · The paper itself

Abstract

Plasticity is needed during development and homeostasis to generate diverse cell types from stem and progenitor cells. Following differentiation, plasticity must be restricted in specialized cells to maintain tissue integrity and function. For this reason, specialized cell identity is stable under homeostatic conditions; however, cells in some tissues regain plasticity during injury-induced regeneration. While precise gene expression controls these processes, the regulatory mechanisms that restrict or promote cell plasticity are poorly understood. Here we use the mouse small intestine as a model system to study cell plasticity. We find that H3K36 methylation reinforces expression of cell-type-associated genes to maintain specialized cell identity in intestinal epithelial cells. Depleting H3K36 methylation disrupts lineage commitment and activates regenerative gene expression. Correspondingly, we observe rapid and reversible remodelling of H3K36 methylation following injury-induced regeneration. These data suggest a fundamental role for H3K36 methylation in reinforcing specialized lineages and regulating cell plasticity and regeneration.

Indexed as

Cell PlasticityHistonesIntestinal MucosaIntestine, SmallRegenerationAnimalsCell DifferentiationCell LineageEpithelial CellsMethylationMiceMice, Inbred C57BLHistones

Identifiers

PMID39779942
PMCPMC12342706

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.