Evidence map›Paper›PMID 39779878›Full record

ArticleNature microbiology2025

Enterobactin inhibits microbiota-dependent activation of AhR to promote bacterial sepsis in mice.

Robert C Keskey, Jason Xiao, Sanjiv Hyoju, Adam Lam, Daniel Kim, Ashley M Sidebottom, Alexander Zaborin, Anne Dijkstra, Rebecca Meltzer, Abhimanyu Thakur and 9 more

Abstract read
In one paragraph

Article in Nature microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

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  14. Microbial metabolite oxindole curbs acute lung injury by suppressing CXCL13.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  15. Article
  16. Article
  17. Review
  18. Proanthocyanidins inhibit methicillin-resistantCurrent research in food science · 2026
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Robert C KeskeySection of General Surgery, Department of Surgery, University of Chicago, Chicago, IL, USA. rkeskey@uchicagomedicine.org.ORCID http://orcid.org/0009-0008-5813-8770
Jason XiaoPritzker School of Medicine, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-1252-5915
Sanjiv HyojuSection of General Surgery, Department of Surgery, University of Chicago, Chicago, IL, USA.
Adam LamSection of General Surgery, Department of Surgery, University of Chicago, Chicago, IL, USA.
Daniel KimPritzker School of Medicine, University of Chicago, Chicago, IL, USA.
Ashley M SidebottomHost-Microbe Metabolomics Facility, Duchossois Family Institute, The University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-8670-9090
Alexander ZaborinSection of General Surgery, Department of Surgery, University of Chicago, Chicago, IL, USA.
Anne DijkstraDepartment of Surgery, Radboud University Medical Center, Nijmegen, Netherlands.ORCID http://orcid.org/0009-0004-8162-5906
Rebecca MeltzerSection of General Surgery, Department of Surgery, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0009-0005-2478-1037
Abhimanyu ThakurPrtizker School of Molecular Engineering, University of Chicago, Chicago, IL, USA.
Kui ZhangPrtizker School of Molecular Engineering, University of Chicago, Chicago, IL, USA.
Huanhuan Joyce ChenPrtizker School of Molecular Engineering, University of Chicago, Chicago, IL, USA.
Natalia V BeloborodovaFederal Research and Clinical Center of Intensive Care Medicine and Rehabilitology, Moscow, Russia.
Alisa K PautovaFederal Research and Clinical Center of Intensive Care Medicine and Rehabilitology, Moscow, Russia.ORCID http://orcid.org/0000-0001-6470-0485
Krysta WolfeSection of Pulmonary and Critical Care, Department of Medicine, University of Chicago, Chicago, IL, USA.
Bhakti PatelSection of Pulmonary and Critical Care, Department of Medicine, University of Chicago, Chicago, IL, USA.
Renee ThewissenHost-Microbe Metabolomics Facility, Duchossois Family Institute, The University of Chicago, Chicago, IL, USA.
Olga ZaborinaSection of General Surgery, Department of Surgery, University of Chicago, Chicago, IL, USA.
John C AlverdySection of General Surgery, Department of Surgery, University of Chicago, Chicago, IL, USA. jalverdy@bsd.surgery.uchicago.edu.ORCID http://orcid.org/0000-0003-1854-4551

Funding

PSEUDOMONAS'EFFECTS ON THE GUT BARRIER FROM SURGERYR01GM062344 · NIGMS · UNIVERSITY OF CHICAGO · PI ALVERDY, JOHN C · 2001 to 2025
$9.2M
Early Mobilization: Operationalizing Big Data & Implementation Science to Lead Expansion to ICUs (E-MOBILE-ICU)K23HL148387 · NHLBI · UNIVERSITY OF CHICAGO · PI PATEL, BHAKTI KIRAN · 2020 to 2024
$812k
NHLBI NIH HHS K23 HL148387NIGMS NIH HHS R01 GM062344U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GMO62344-22
6 · The paper itself

Abstract

Sepsis is a major cause of morbidity and mortality, but our understanding of the mechanisms underlying survival or susceptibility is limited. Here, as pathogens often subvert host defence mechanisms, we hypothesized that this might influence the outcome of sepsis. We used microbiota analysis, faecal microbiota transplantation, antibiotic treatment and caecal metabolite analysis to show that gut-microbiota-derived tryptophan metabolites including indoles increased host survival in a mouse model of Serratia marcescens sepsis. Infection in macrophage-specific aryl hydrocarbon receptor (AhR) knockout mice revealed that AhR activation induced transcriptional reprogramming in macrophages and increased bacterial clearance and host survival. However, culture supernatants from multiple bacterial pathogens inhibited AhR activation in vitro. We showed that the secreted siderophore, enterobactin, inhibited AhR activation in vitro and increased sepsis mortality in vivo. By contrast, oral or systemic tryptophan supplementation increased survival. These findings show that sepsis survival depends upon the interplay between pathogen inhibition and the activation of AhR by a microbiota-derived metabolite.

Indexed as

EnterobactinGastrointestinal MicrobiomeReceptors, Aryl HydrocarbonSepsisSerratia InfectionsAnimalsBasic Helix-Loop-Helix ProteinsCecumDisease Models, AnimalFecal Microbiota TransplantationMacrophagesMiceMice, Inbred C57BLMice, KnockoutSerratia marcescensTryptophanAhr protein, mouseBasic Helix-Loop-Helix ProteinsEnterobactinReceptors, Aryl HydrocarbonTryptophan

Identifiers

PMID39779878
PMCPMC11905502

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.