Evidence map›Paper›PMID 39779699›Full record

ArticleNature communications2025

AFM observation of protein translocation mediated by one unit of SecYEG-SecA complex.

Yui Kanaoka, Takaharu Mori, Wataru Nagaike, Seira Itaya, Yuto Nonaka, Hidetaka Kohga, Takamitsu Haruyama, Yasunori Sugano, Ryoji Miyazaki, Muneyoshi Ichikawa and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Regulation of Protein Transport in Functionalized PET Nanopores.The journal of physical chemistry. B · 2025
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yui KanaokaDepartment of Physics, Graduate School of Science, Nagoya University, Nagoya, Aichi, Japan.
Takaharu MoriDepartment of Chemistry, Faculty of Science, Tokyo University of Science, Tokyo, Japan. t.mori@rs.tus.ac.jp.
Wataru NagaikeDepartment of Physics, Graduate School of Science, Nagoya University, Nagoya, Aichi, Japan.
Seira ItayaNara Institute of Science and Technology, Nara, Japan.
Yuto NonakaDepartment of Physics, Graduate School of Science, Nagoya University, Nagoya, Aichi, Japan.
Hidetaka KohgaNara Institute of Science and Technology, Nara, Japan.ORCID 0000-0003-1187-5016
Takamitsu HaruyamaNara Institute of Science and Technology, Nara, Japan.
Yasunori SuganoNara Institute of Science and Technology, Nara, Japan.
Ryoji MiyazakiNara Institute of Science and Technology, Nara, Japan.ORCID 0000-0003-1626-2569
Muneyoshi IchikawaState Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Biochemistry and Biophysics, School of Life Sciences, Fudan University, Shanghai, China.ORCID 0000-0002-5921-7699
Takayuki UchihashiDepartment of Physics, Graduate School of Science, Nagoya University, Nagoya, Aichi, Japan. uchihast@d.phys.nagoya-u.ac.jp.ORCID 0000-0002-0263-5312
Tomoya TsukazakiNara Institute of Science and Technology, Nara, Japan. ttsukaza@bs.naist.jp.ORCID 0000-0002-6386-723X

Funding

MEXT | Japan Science and Technology Agency (JST) JPMJKP23H2MEXT | Japan Science and Technology Agency (JST) JPMJPR20E1Ministry of Education, Culture, Sports, Science and Technology (MEXT) hp230209, hp240215, hp240277Ministry of Education, Culture, Sports, Science and Technology (MEXT) JPMXP1323015482Natural Science Foundation of Shanghai (Natural Science Foundation of Shanghai Municipality) 24ZR1403800
6 · The paper itself

Abstract

Protein translocation across cellular membranes is an essential and nano-scale dynamic process. In the bacterial cytoplasmic membrane, the core proteins in this process are a membrane protein complex, SecYEG, corresponding to the eukaryotic Sec61 complex, and a cytoplasmic protein, SecA ATPase. Despite more than three decades of extensive research on Sec proteins, from genetic experiments to cutting-edge single-molecule analyses, no study has visually demonstrated protein translocation. Here, we visualize the translocation, via one unit of a SecYEG-SecA-embedded nanodisc, of an unfolded substrate protein by high-speed atomic force microscopy (HS-AFM). Additionally, the uniform unidirectional distribution of nanodiscs on a mica substrate enables the HS-AFM image data analysis, revealing dynamic structural changes in the polypeptide-crosslinking domain of SecA between wide-open and closed states depending on nucleotides. The nanodisc-AFM approach will allow us to execute detailed analyses of Sec proteins as well as visualize nano-scale events of other membrane proteins.

Indexed as

Escherichia coli ProteinsMicroscopy, Atomic ForceProtein TransportSecA ProteinsSEC Translocation ChannelsAdenosine TriphosphatasesBacterial ProteinsCell MembraneEscherichia coliMembrane ProteinsMembrane Transport ProteinsAdenosine TriphosphatasesBacterial ProteinsEscherichia coli ProteinsMembrane ProteinsMembrane Transport ProteinsSecA protein, E coliSecA ProteinsSEC Translocation Channels

Identifiers

PMID39779699
PMCPMC11711467

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.