Evidence map›Paper›PMID 39776071›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2025

3D Cell Culture Models as a Platform for Studying Tumor Progression, Testing Treatment Responses, and Discovering Biomarkers.

Peyda Korhan, Ezgi Bağırsakçı, Yasemin Öztemur Islakoğlu, Neşe Atabey

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Article in Methods in molecular biology (Clifton, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Peyda KorhanFaculty of Medicine, Department of Medical Biology, Izmir Tinaztepe University, Izmir, Turkey.
Ezgi BağırsakçıIzmir Biomedicine and Genome Center, Izmir, Turkey.
Yasemin Öztemur IslakoğluIzmir Biomedicine and Genome Center, Izmir, Turkey.
Neşe AtabeyFaculty of Medicine, Department of Medical Biology, Izmir Tinaztepe University, Izmir, Turkey. nese.atabey@ibg.edu.tr.ORCID https://orcid.org/0000-0003-4966-2980

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this chapter, we present a detailed protocol for establishing a three-dimensional (3D) multicellular tumor spheroids (MCTSs) model to simulate the tumor microenvironment (ME) associated with metabolic dysfunction-associated steatotic liver disease (MASLD) for the study of hepatocellular carcinoma (HCC) and colorectal cancer (CRC) cell aggressiveness, growth, and metastasis potential. The MASLD microenvironment (MASLD-ME) is recreated by embedding hepatic stellate cells in a collagen I matrix within a Boyden chamber system. The metabolic medium mimics MASLD conditions, enriched with high glucose, fructose, insulin, and fatty acids, to simulate metabolic stresses associated with the disease.In the protocol, cancer cells are loaded in the upper compartment to analyze their migration toward the MASLD-ME, thereby facilitating studies on cancer cell invasiveness and metastatic capacity. This method offers an adaptable, reproducible model to research disease progression and investigate therapeutic interventions, contributing to preclinical research on MASLD-related liver cancer pathophysiology and potential drug responses.

Indexed as

Biomarkers, TumorCell Culture TechniquesCell Culture Techniques, Three DimensionalLiver NeoplasmsCarcinoma, HepatocellularCell Line, TumorCell MovementColorectal NeoplasmsDisease ProgressionHepatic Stellate CellsHumansSpheroids, CellularTumor MicroenvironmentBiomarkers, TumorColorectal carcinomaHepatocellular carcinomaIn vitro three-dimensional disease modelsMetabolic dysfunction-associated steatohepatitisMetabolic dysfunction-associated steatotic liver diseaseMulticellular tumor spheroidsTumor microenvironment

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.