Evidence map›Paper›PMID 39775891›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2025

The tomato gene Ty-6, encoding DNA polymerase delta subunit 1, confers broad resistance to Geminiviruses.

Xuexue Shen, Upinder Gill, Marjon Arens, Zhe Yan, Yuling Bai, Samuel F Hutton, Anne-Marie A Wolters

Abstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. A dominant mutation in tomato DNA POLYMERASE DELTA 1 causes geminivirus DNA replication catastrophe.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Elucidation of theFrontiers in plant science · 2026
    Article
  4. Article
  5. A TIR-NLR gene from Arabidopsis Pla-1 confers resistance to geminivirus infection.The Plant journal : for cell and molecular biology · 2025
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xuexue ShenPlant Breeding, Wageningen University and Research, Wageningen, The Netherlands.
Upinder GillDepartment of Horticultural Sciences, Gulf Coast Research and Education Center, University of Florida, Wimauma, FL, USA.
Marjon ArensPlant Breeding, Wageningen University and Research, Wageningen, The Netherlands.
Zhe YanPlant Breeding, Wageningen University and Research, Wageningen, The Netherlands.
Yuling BaiPlant Breeding, Wageningen University and Research, Wageningen, The Netherlands.
Samuel F HuttonDepartment of Horticultural Sciences, Gulf Coast Research and Education Center, University of Florida, Wimauma, FL, USA.
Anne-Marie A WoltersPlant Breeding, Wageningen University and Research, Wageningen, The Netherlands. anne-marie.wolters@wur.nl.ORCID http://orcid.org/0000-0001-8537-5132

Funding

National Institute of Food and Agriculture 2018-51181-28420
6 · The paper itself

Abstract

key messageThe tomato Ty-6 gene conferring resistance against begomoviruses has been cloned and shown to be a variant of DNA polymerase delta subunit 1. Ty-6 is a major resistance gene of tomato that provides resistance against monopartite and bipartite begomoviruses. The locus was previously mapped on chromosome 10, and in this study, we fine-mapped Ty-6 to a region of 47 kb, including four annotated candidate genes. Via whole-genome resequencing of Ty-6 breeding lines and several susceptible breeding lines, the polymorphisms in gene sequences were discovered and gene-associated markers were developed for marker-assistant breeding. Further, virus-induced gene silencing and candidate gene overexpressing in susceptible tomatoes revealed that Ty-6-mediated resistance is controlled by Solyc10g081250, encoding the DNA polymerase delta subunit 1, SlPOLD1. The single nucleotide polymorphism of Ty-6 results in an amino acid change that might influence the fidelity of virus DNA replication.

Indexed as

Disease ResistanceDNA Polymerase IIIPlant DiseasesPolymorphism, Single NucleotideSolanum lycopersicumBegomovirusChromosome MappingGeminiviridaeGenes, PlantGenetic MarkersPlant ProteinsDNA Polymerase IIIGenetic MarkersPlant Proteins

Identifiers

PMID39775891
PMCPMC11711579

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.