Evidence map›Paper›PMID 39774001›Full record

ArticleJCI insight2025

Multidimensional analyses identify genes of high priority for pancreatic cancer research.

Zeribe C Nwosu, Heather M Giza, Maya Nassif, Verodia Charlestin, Rosa E Menjivar, Daeho Kim, Samantha B Kemp, Peter Sajjakulnukit, Anthony Andren, Li Zhang and 8 more

Abstract read
In one paragraph

Article in JCI insight, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Zeribe C NwosuDepartment of Molecular & Integrative Physiology, University of Michigan, Ann Arbor, Michigan, USA.
Heather M GizaDepartment of Molecular & Integrative Physiology, University of Michigan, Ann Arbor, Michigan, USA.
Maya NassifDepartment of Molecular & Integrative Physiology, University of Michigan, Ann Arbor, Michigan, USA.
Verodia CharlestinDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana, USA.
Rosa E MenjivarCellular and Molecular Biology Program and.
Daeho KimDepartment of Surgery, University of Michigan, Ann Arbor, Michigan, USA.
Samantha B KempDepartment of Surgery, University of Michigan, Ann Arbor, Michigan, USA.
Peter SajjakulnukitDepartment of Molecular & Integrative Physiology, University of Michigan, Ann Arbor, Michigan, USA.
Anthony AndrenDepartment of Molecular & Integrative Physiology, University of Michigan, Ann Arbor, Michigan, USA.
Li ZhangDepartment of Molecular & Integrative Physiology, University of Michigan, Ann Arbor, Michigan, USA.
William Km LaiDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, USA.
Ian LovelessCenter for Bioinformatics, Department of Public Health Sciences, Henry Ford Health, Detroit, Michigan, USA.
Nina SteeleHenry Ford Pancreatic Cancer Center, Department of Surgery, Detroit, Michigan, USA.
Jiantao HuDepartment of Internal Medicine, Medical School.
Biao HuDepartment of Internal Medicine, Medical School.
Shaomeng WangDepartment of Internal Medicine, Medical School.
Marina Pasca di MaglianoDepartment of Surgery, University of Michigan, Ann Arbor, Michigan, USA.
Costas A LyssiotisDepartment of Molecular & Integrative Physiology, University of Michigan, Ann Arbor, Michigan, USA.

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alexey I Nesvizhskii · 1988 to 2026
$178.2M
Tumor Microenvironment Crosstalk Drives Early Lesions in Pancreatic CancerU54CA274371 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI ANIRBAN MAITRA, Marina Pasca Di Magliano · 2022 to 2026
$9.5M
University of Michigan Postbaccalaureate Research Education Program (UM PREP)R25GM086262 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ALLEN, BENJAMIN · 2009 to 2024
$6.1M
Fibroblast orchestration of the immune response in pancreatic cancerU01CA274154 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Howard C. Crawford, Timothy Louis Frankel · 2022 to 2026
$4.2M
Chemistry-Biochemistry-Biology Training Program at Notre DameT32GM075762 · NIGMS · UNIVERSITY OF NOTRE DAME · PI CHANG, MAYLAND F, MOBASHERY, SHAHRIAR · 2007 to 2021
$3.7M
Mechanisms of Pancreatic Inflammation, Tissue Repair and CarcinogenesisR01CA151588 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PASCA DI MAGLIANO, MARINA · 2010 to 2020
$3.3M
Intratumoral Metabolic Crosstalk Promotes Therapeutic Resistance in Pancreatic CancerR37CA237421 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Costas Andreas Lyssiotis · 2020 to 2026
$2.6M
The 'Career MODE' Program: Careers through Mentoring and training in Omics and Data for Early-stage investigatorsR25GM143298 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI IONITA, IULIANA, RE, DIANE BERENGERE · 2021 to 2025
$2.3M
Stromal metabolism promotes therapeutic resistance in pancreatic cancerR01CA248160 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LYSSIOTIS, COSTAS ANDREAS · 2020 to 2024
$2.0M
Targeting metabolic stress to induce pancreatic tumor cell deathR01CA244931 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LYSSIOTIS, COSTAS ANDREAS · 2020 to 2024
$1.9M
Dosage-Dependent Hedgehog Signaling in Pancreatic CancerR01CA198074 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ALLEN, BENJAMIN, PASCA DI MAGLIANO, MARINA · 2015 to 2019
$1.9M
Deconvolving the language of protein bindingR35GM155380 · NIGMS · CORNELL UNIVERSITY · PI William Lai · 2024 to 2026
$1.2M
NCI NIH HHS F31 CA247076NCI NIH HHS K99 CA267176NCI NIH HHS P30 CA046592NCI NIH HHS R00 CA267176NCI NIH HHS R01 CA151588NCI NIH HHS R01 CA198074NCI NIH HHS R01 CA244931NCI NIH HHS R01 CA248160NCI NIH HHS R37 CA237421NCI NIH HHS U01 CA274154NCI NIH HHS U54 CA274371NIGMS NIH HHS R25 GM086262NIGMS NIH HHS R25 GM143298NIGMS NIH HHS R35 GM155380NIGMS NIH HHS T32 GM075762
6 · The paper itself

Abstract

Pancreatic ductal adenocarcinoma (PDAC) is a drug-resistant and lethal cancer. Identification of the genes that consistently show altered expression across patient cohorts can expose effective therapeutic targets and strategies. To identify such genes, we separately analyzed 5 human PDAC microarray datasets. We defined genes as "consistent" if upregulated or downregulated in 4 or more datasets (adjusted P < 0.05). The genes were subsequently queried in additional datasets, including single-cell RNA-sequencing data, and we analyzed their pathway enrichment, tissue specificity, essentiality for cell viability, and association with cancer features, e.g., tumor subtype, proliferation, metastasis, and poor survival outcome. We identified 2,010 consistently upregulated and 1,928 downregulated genes, of which more than 50% to our knowledge were uncharacterized in PDAC. These genes spanned multiple processes, including cell cycle, immunity, transport, metabolism, signaling, and transcriptional/epigenetic regulation - cell cycle and glycolysis being the most altered. Several upregulated genes correlated with cancer features, and their suppression impaired PDAC cell viability in prior CRISPR/Cas9 and RNA interference screens. Furthermore, the upregulated genes predicted sensitivity to bromodomain and extraterminal (epigenetic) protein inhibition, which, in combination with gemcitabine, disrupted amino acid metabolism and in vivo tumor growth. Our results highlight genes for further studies in the quest for PDAC mechanisms, therapeutic targets, and biomarkers.

Indexed as

Carcinoma, Pancreatic DuctalGene Expression Regulation, NeoplasticPancreatic NeoplasmsAnimalsBiomarkers, TumorCell Line, TumorDeoxycytidineGemcitabineGene Expression ProfilingHumansMiceBiomarkers, TumorDeoxycytidineGemcitabineCancerGastroenterologyGlucose metabolismMolecular geneticsOncology

Identifiers

PMID39774001
PMCPMC11949049

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.