Evidence map›Paper›PMID 39772734›Full record

ArticleJournal of the Royal Society, Interface2025

Optimizing contact tracing for avian influenza in poultry flocks.

Sébastien Lambert, Lisa Fourtune, Peter H F Hobbelen, Julie Baca, José L Gonzales, Armin R W Elbers, Timothée Vergne

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Optimizing contact tracing for avian influenza in poultry flocks.Journal of the Royal Society, Interface · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sébastien LambertIHAP, Université de Toulouse, INRAE, ENVT, Toulouse, France.ORCID 0000-0001-6901-373X
Lisa FourtuneIHAP, Université de Toulouse, INRAE, ENVT, Toulouse, France.ORCID 0000-0002-9481-3461
Peter H F HobbelenDepartment of Epidemiology, Bioinformatics and Animal Models, Wageningen Bioveterinary Research, Lelystad, The Netherlands.
Julie BacaIHAP, Université de Toulouse, INRAE, ENVT, Toulouse, France.
José L GonzalesDepartment of Epidemiology, Bioinformatics and Animal Models, Wageningen Bioveterinary Research, Lelystad, The Netherlands.
Armin R W ElbersDepartment of Epidemiology, Bioinformatics and Animal Models, Wageningen Bioveterinary Research, Lelystad, The Netherlands.ORCID 0000-0001-5977-0219
Timothée VergneIHAP, Université de Toulouse, INRAE, ENVT, Toulouse, France.ORCID 0000-0002-1146-9256

Funding

National Veterinary College of ToulouseThe Netherlands' Ministry of Agriculture, Nature and Food Quality
6 · The paper itself

Abstract

Contact tracing is commonly used to manage infectious diseases of both humans and animals. It aims to detect early and control potentially infected individuals or farms that had contact with infectious cases. Because it is very resource-intensive, contact tracing is usually performed on a pre-defined time window, based on previous knowledge of the duration of the incubation period. However, pre-defined time windows may not be always relevant, reducing the efficiency of contact tracing. In this study, we estimated the day when farms were first infected with highly pathogenic avian influenza viruses, a devastating pathogen causing severe socio-economic damage in domestic poultry. The estimation was performed by fitting a stochastic mechanistic model to observed daily mortality data from 63 infected poultry farms in France and The Netherlands, using approximate Bayesian computation. Independent of the poultry species or country, the estimates of the time of first infection ranged between 3.4 (95% credible interval-CrI: 2.6, 4.6) and 19.9 (95% CrI: 11.9, 31.3) days prior to the last observation. We developed an online application to provide real-time support to policymakers by estimating realistic ranges of dates of first infection to inform contact tracing and improve its efficiency.

Indexed as

Contact TracingInfluenza in BirdsAnimalsFranceModels, BiologicalNetherlandsPoultryPoultry Diseasesapproximate Bayesian computationhighly pathogenic avian influenzamechanistic modellingmortality dataShiny apptime of first infection

Identifiers

PMID39772734
PMCPMC11706645

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.