Evidence map›Paper›PMID 39772594›Full record

ArticleJournal of chemical information and modeling2025

Engineering Protein Dynamics through Mutational Energy Landscape Traps.

Lucas de Almeida Machado, João Sartori, Paula Fernandes da Costa Franklin, Mauricio G S Costa, Ana Carolina Ramos Guimarães

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Lucas de Almeida MachadoInstituto Nacional de Saúde da Mulher, da Criança e do Adolescente - Fiocruz, Rio de Janeiro, Brazil 22250-020.ORCID 0000-0002-6575-1687
João SartoriLaboratório de Genômica Aplicada e Bioinovações - Instituto Oswaldo Cruz/Fiocruz, Rio de Janeiro, Brazil 21040-900.
Paula Fernandes da Costa FranklinLaboratório de Genômica Aplicada e Bioinovações - Instituto Oswaldo Cruz/Fiocruz, Rio de Janeiro, Brazil 21040-900.
Mauricio G S CostaPrograma de Computação Científica - Fiocruz, Rio de Janeiro, Brazil 21040-900.ORCID 0000-0001-5443-286X
Ana Carolina Ramos GuimarãesLaboratório de Genômica Aplicada e Bioinovações - Instituto Oswaldo Cruz/Fiocruz, Rio de Janeiro, Brazil 21040-900.ORCID 0000-0003-1260-543X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein dynamics is essential for various biological processes, influencing functions such as enzyme activity, molecular recognition, and signal transduction. However, traditional protein engineering methods often focus on static structures, lacking tools to precisely manipulate dynamic behaviors. Here, we developed Mutational Energy Landscape Trap (MELT), a novel method designed to control protein dynamics by combining Normal Mode Analysis (NMA) and

Indexed as

Molecular Dynamics SimulationMuramidaseMutationProtein EngineeringProtein ConformationThermodynamicshen egg lysozymeMuramidase

Identifiers

PMID39772594
PMCPMC11776041

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.