Evidence map›Paper›PMID 39772160›Full record

ArticleViruses2024

Phylogeography and Evolutionary Dynamics of Tobacco Curly Shoot Virus.

Xingxiu Long, Shiwei Zhang, Jianguo Shen, Zhenguo Du, Fangluan Gao

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Xingxiu LongInstitute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Shiwei ZhangInstitute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Jianguo ShenFujian Key Laboratory for Technology Research of Inspection and Quarantine, Technology Center of Fuzhou Customs District, Fuzhou 350001, China.ORCID 0000-0002-0459-9634
Zhenguo DuInstitute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Fangluan GaoInstitute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.ORCID 0000-0001-9031-9944

Funding

the Agricultural Guidance (Key) Project of Fujian Province, Fujian, China 2024N0003the Natural Science Foundation of China, China 32370100the Scientific Research Project of General Administration of Customs, China 2024HK040
6 · The paper itself

Abstract

Tobacco curly shoot virus (TbCSV), a begomovirus, causes significant economic losses in tobacco and tomato crops across East, Southeast, and South Asia. Despite its agricultural importance, the evolutionary dynamics and emergence process of TbCSV remain poorly understood. This study analyzed the phylodynamics of TbCSV by examining its nucleotide sequences of the coat protein (CP) gene collected between 2000 and 2022. Using various combinations of priors, Bayes factor comparisons identified heterochronous datasets (3 × 100 million chains) generated from a strict molecular clock and Bayesian skyline tree priors as the most robust. The mean substitution rate of the CP gene was estimated at 6.50 × 10

Indexed as

BegomovirusEvolution, MolecularNicotianaPhylogenyPhylogeographyPlant DiseasesAsiaBayes TheoremCapsid ProteinsCapsid ProteinsBayesian phylodynamicsBegomovirussubstitution ratetemporal signaltobacco curly shoot virus

Identifiers

PMID39772160
PMCPMC11680240

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.