Evidence map›Paper›PMID 39769326›Full record

ArticleInternational journal of molecular sciences2024

Integrated Transcriptomic, Proteomic, and Metabolomic Analyses Revealed Molecular Mechanism for Salt Resistance in Soybean (

Siqi Fu, Lu Wang, Chunqian Li, Yinhui Zhao, Nan Zhang, Lei Yan, Chang Ming Li, Yusheng Niu

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  4. Review
  5. Article
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  7. Article
  8. Article
  9. Review
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  11. Article
  12. Salt Tolerance in Soybean (Plants (Basel, Switzerland) · 2025
    Review
  13. Article
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  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Siqi FuInstitute of Biomedical Engineering, College of Life Sciences, Qingdao University, Qingdao 266071, China.
Lu WangInstitute of Biomedical Engineering, College of Life Sciences, Qingdao University, Qingdao 266071, China.ORCID 0009-0005-5674-4222
Chunqian LiInstitute of Biomedical Engineering, College of Life Sciences, Qingdao University, Qingdao 266071, China.
Yinhui ZhaoInstitute of Biomedical Engineering, College of Life Sciences, Qingdao University, Qingdao 266071, China.
Nan ZhangInstitute of Biomedical Engineering, College of Life Sciences, Qingdao University, Qingdao 266071, China.
Lei YanInstitute of Biomedical Engineering, College of Life Sciences, Qingdao University, Qingdao 266071, China.ORCID 0009-0003-3276-3897
Chang Ming LiInstitute of Materials Science and Devices, School of Materials Science and Engineering, Suzhou University of Science and Technology, Suzhou 215009, China.ORCID 0000-0002-4041-2574
Yusheng NiuInstitute of Biomedical Engineering, College of Life Sciences, Qingdao University, Qingdao 266071, China.

Funding

National Natural Science Foundation of China 32300636Natural Science Foundation of Qingdao 23-2-1-51-zyyd-jchNatural Science Foundation of Shandong Province 2024HWYQ-068Natural Science Foundation of Shandong Province ZR2021MD094Natural Science Foundation of Shandong Province ZR2023QC315
6 · The paper itself

Abstract

Salt stress poses a significant challenge to plant growth and restricts agricultural development. To delve into the intricate mechanisms involved in soybean's response to salt stress and find targets to improve the salt resistance of soybean, this study integrated transcriptomic, proteomic, and metabolomic analyses to explore the regulatory networks involved in soybean salt tolerance. Transcriptomic analysis revealed significant changes in transcription factors, hormone-related groups, and calcium ion signaling. Notably, the biosynthetic pathways of cutin, suberine, and wax biosynthesis play an important role in this process. Proteomic results indicated salt-induced DNA methylation and the enrichment of phosphopyruvate hydrase post-salt stress, as well as its interaction with enzymes from various metabolic pathways. Metabolomic data unveiled the synthesis of various metabolites, including lipids and flavonoids, in soybean following salt stress. Furthermore, the integrated multiomics results highlighted the activation of multiple metabolic pathways in soybean in response to salt stress, with six pathways standing out prominently: stilbenoid, diarylheptanoid, and gingerol biosynthesis; carotenoid biosynthesis; carbon fixation in photosynthetic organisms; alanine, aspartate, and glutamate metabolism; thiamine metabolism; and pyruvate metabolism. These findings not only offer valuable insights into leveraging multiomics profiling techniques for uncovering salt tolerance mechanisms but also identify candidate genes for soybean improvement.

Indexed as

Gene Expression Regulation, PlantGlycine maxMetabolomicsProteomicsSalt ToleranceSeedlingsTranscriptomeGene Expression ProfilingMetabolomePlant ProteinsProteomeSalt StressPlant ProteinsProteomeabiotic stresscuticle biosynthesisDNA methylationmultiomicsRNA-seq

Identifiers

PMID39769326
PMCPMC11678865

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.