Evidence map›Paper›PMID 39766784›Full record

ArticleGenes2024

Combined Use of Univariate and Multivariate Approaches to Detect Selection Signatures Associated with Milk or Meat Production in Cattle.

Michele Congiu, Alberto Cesarani, Laura Falchi, Nicolò Pietro Paolo Macciotta, Corrado Dimauro

Abstract read
In one paragraph

Article in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Michele CongiuDipartimento di Agraria, Università degli Studi di Sassari, 07100 Sassari, Italy.ORCID 0009-0000-0351-9658
Alberto CesaraniDipartimento di Agraria, Università degli Studi di Sassari, 07100 Sassari, Italy.ORCID 0000-0003-4637-8669
Laura FalchiDipartimento di Agraria, Università degli Studi di Sassari, 07100 Sassari, Italy.ORCID 0000-0001-5950-8456
Nicolò Pietro Paolo MacciottaDipartimento di Agraria, Università degli Studi di Sassari, 07100 Sassari, Italy.
Corrado DimauroDipartimento di Agraria, Università degli Studi di Sassari, 07100 Sassari, Italy.ORCID 0000-0002-6588-923X

Funding

Mining big-data to fit animal to climate change, improve welfare and mitigate the environmental impact of livestock productions (BIGFit) CUP J53D23010110006, Finanziamento dell'UnioneEuropea - NextGenerationEU
6 · The paper itself

Abstract

objectivesThe aim of this study was to investigate the genomic structure of the cattle breeds selected for meat and milk production and to identify selection signatures between them.

methodsA total of 391 animals genotyped at 41,258 SNPs and belonging to nine breeds were considered: Angus (N = 62), Charolais (46), Hereford (31), Limousin (44), and Piedmontese (24), clustered in the Meat group, and Brown Swiss (42), Holstein (63), Jersey (49), and Montbéliarde (30), clustered in the Milk group. The population stratification was analyzed by principal component analysis (PCA), whereas selection signatures were identified by univariate (Wright fixation index, F

resultsA total of 10 SNPs located on seven different chromosomes (7, 10, 14, 16, 17, 18, and 24) were identified. Close to these SNPs (±250 kb), 165 QTL and 51 genes were found. The QTL were grouped in 45 different terms, of which three were significant (Bonferroni correction < 0.05): milk fat content, tenderness score, and length of productive life. Moreover, genes mainly associated with milk production, immunity and environmental adaptation, and reproduction were mapped close to the common SNPs.

conclusionsThe results of the present study suggest that the combined use of univariate and multivariate approaches can help to better identify selection signatures due to directional selection.

Indexed as

MilkPolymorphism, Single NucleotideQuantitative Trait LociAnimalsBreedingCattleFemaleGenotypeMeatSelection, Geneticdiscriminant analysismultivariate statisticsselection signatureswright fixation index

Identifiers

PMID39766784
PMCPMC11675734

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.