Evidence map›Paper›PMID 39765732›Full record

ArticleBiology2024

Biological Implications of the Intrinsic Deformability of Human Acetylcholinesterase Induced by Diverse Compounds: A Computational Study.

Ysaías J Alvarado, Lenin González-Paz, José L Paz, Marcos A Loroño-González, Julio Santiago Contreras, Carla Lossada, Alejandro Vivas, Yovani Marrero-Ponce, Felix Martinez-Rios, Patricia Rodriguez-Lugo and 2 more

Abstract read
In one paragraph

Article in Biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Ysaías J AlvaradoLaboratorio de Química Biofísica Experimental y Teórica (LQBET), Instituto Venezolano de Investigaciones Científicas (IVIC), Centro de Biomedicina Molecular (CBM), Maracaibo 4001, Zulia, República Bolivariana de Venezuela.
Lenin González-PazLaboratorio de Modelado, Dinamica y Bioquímica Subcelular (LMDBS), Instituto Venezolano de Investigaciones Científicas (IVIC), Centro de Biomedicina Molecular (CBM), Maracaibo 4001, Zulia, República Bolivariana de Venezuela.ORCID 0000-0003-0023-7342
José L PazDepartamento Académico de Química Inorgánica, Facultad de Química e Ingeniería Química, Universidad Nacional Mayor de San Marcos, Lima 15081, Peru.ORCID 0000-0002-6177-7919
Marcos A Loroño-GonzálezDepartamento Académico de Fisicoquímica, Facultad de Química e Ingeniería Química, Universidad Nacional Mayor de San Marcos, Lima 15081, Peru.ORCID 0000-0003-0458-4691
Julio Santiago ContrerasDepartamento Académico de Química Orgánica, Facultad de Química e Ingeniería Química, Universidad Nacional Mayor de San Marcos, Lima 15081, Peru.ORCID 0000-0002-1905-7029
Carla LossadaLaboratorio de Modelado, Dinamica y Bioquímica Subcelular (LMDBS), Instituto Venezolano de Investigaciones Científicas (IVIC), Centro de Biomedicina Molecular (CBM), Maracaibo 4001, Zulia, República Bolivariana de Venezuela.
Alejandro VivasLaboratorio de Modelado, Dinamica y Bioquímica Subcelular (LMDBS), Instituto Venezolano de Investigaciones Científicas (IVIC), Centro de Biomedicina Molecular (CBM), Maracaibo 4001, Zulia, República Bolivariana de Venezuela.ORCID 0000-0001-6750-8712
Yovani Marrero-PonceFacultad de Ingeniería, Universidad Panamericana, Augusto Rodin 498, Insurgentes Mixcoac, Benito Juárez, Ciudad de México 03920, México.ORCID 0000-0003-2721-1142
Felix Martinez-RiosFacultad de Ingeniería, Universidad Panamericana, Augusto Rodin 498, Insurgentes Mixcoac, Benito Juárez, Ciudad de México 03920, México.ORCID 0000-0002-2346-5922
Patricia Rodriguez-LugoLaboratorio de Química Biofísica Experimental y Teórica (LQBET), Instituto Venezolano de Investigaciones Científicas (IVIC), Centro de Biomedicina Molecular (CBM), Maracaibo 4001, Zulia, República Bolivariana de Venezuela.
Yanpiero BalladoresLaboratorio de Física de la Materia Condensada, Instituto Venezolano de Investigaciones Científicas (IVIC), Apartado 20632, Caracas, República Bolivariana de Venezuela.
Joan Vera-VillalobosLaboratorio de Análisis Químico Instrumental (LAQUINS), Facultad de Ciencias Naturales y Matemáticas, Departamento de Química y Ciencias Ambientales, Escuela Superior Politécnica del Litoral, Guayaquil ECO90211, Ecuador.ORCID 0000-0002-7782-9664

Funding

National University of San Marcos CONCYTEC-project No. PE501078236-2022-PROCIENCIA
6 · The paper itself

Abstract

The enzyme acetylcholinesterase (AChE) plays a crucial role in the termination of nerve impulses by hydrolyzing the neurotransmitter acetylcholine (ACh). The inhibition of AChE has emerged as a promising therapeutic approach for the management of neurological disorders such as Lewy body dementia and Alzheimer's disease. The potential of various compounds as AChE inhibitors was investigated. In this study, we evaluated the impact of natural compounds of interest on the intrinsic deformability of human AChE using computational biophysical analysis. Our approach incorporates classical dynamics, elastic networks (ENM and NMA), statistical potentials (CUPSAT and SWOTein), energy frustration (Frustratometer), and volumetric cavity analyses (MOLE and PockDrug). The results revealed that cyanidin induced significant changes in the flexibility and rigidity of AChE, especially in the distribution and volume of internal cavities, compared to model inhibitors such as TZ2PA6, and through a distinct biophysical-molecular mechanism from the other inhibitors considered. These findings suggest that cyanidin could offer potential mechanistic pathways for future research and applications in the development of new treatments for neurodegenerative diseases.

Indexed as

AChE inhibitorsAlzheimer’s diseasestructural flexibility

Identifiers

PMID39765732
PMCPMC11672903

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.