Evidence map›Paper›PMID 39763938›Full record

ArticlebioRxiv : the preprint server for biology2024

DNAJC13 localization to endosomes is opposed by its J domain and its disordered C-terminal tail.

Hayden Adoff, Brandon Novy, Emily Holland, Braden T Lobingier

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Hayden AdoffDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, OR 97239, USA.ORCID 0000-0002-0373-3678
Brandon NovyDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, OR 97239, USA.ORCID 0000-0001-5304-2640
Emily HollandDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, OR 97239, USA.ORCID 0000-0003-1332-2896
Braden T LobingierDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, OR 97239, USA.ORCID 0000-0001-7881-7502

Funding

Understanding the origins of rapid recurrence of pancreatic cancer after resectionP30CA069533 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Luiz Eduardo Bertassoni · 1997 to 2026
$60.5M
Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI John Peter Campbell · 1995 to 2026
$19.4M
Program in Biomedical SciencesT32GM142619 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI Jeffrey Wallace Tyner · 2021 to 2026
$3.2M
Endosomes as a multifunctional hub to control GPCR functionR35GM137835 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI Braden Lobingier · 2020 to 2026
$2.5M
LTQ Orbitrap VelosS10OD012246 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAVID, LARRY L · 2012 to 2012
$854k
NCI NIH HHS P30 CA069533NEI NIH HHS P30 EY010572NIGMS NIH HHS R35 GM137835NIGMS NIH HHS T32 GM142619NIH HHS S10 OD012246
6 · The paper itself

Abstract

Endosomes are a central sorting hub for membrane cargos. DNAJC13/RME-8 plays a critical role in endosomal trafficking by regulating the endosomal recycling or degradative pathways. DNAJC13 localizes to endosomes through its N-terminal Plekstrin Homology (PH)-like domain, which directly binds endosomal phosphoinositol-3-phosphate (PI(3)P). However, little is known about how DNAJC13 localization is regulated. Here, we show that two regions within DNAJC13, its J domain and disordered C-terminal tail, act as negative regulators of its PH-like domain. Using a structure-function approach combined with quantitative proteomics, we mapped these control points to a conserved YLT motif in the C-terminal tail as well as the catalytic HPD triad in its J domain. Mutation of either motif enhanced DNAJC13 endosomal localization in cells and increased binding to PI(3)P

Identifiers

PMID39763938
PMCPMC11702692

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.