Evidence map›Paper›PMID 39763919›Full record

ArticlebioRxiv : the preprint server for biology2024

An Agent-Based Model of Metabolic Signaling Oscillations in

Obadiah J Mulder, Maya Peters Kostman, Abdulrahmen Almodaimegh, Michael D Edge, Joseph W Larkin

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Obadiah J MulderDepartment of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.
Maya Peters KostmanDepartments of Biology and Physics, Boston University, Boston, MA, USA.
Abdulrahmen AlmodaimeghDepartments of Biology and Physics, Boston University, Boston, MA, USA.
Michael D EdgeDepartment of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.ORCID 0000-0001-8773-2906
Joseph W LarkinDepartments of Biology and Physics, Boston University, Boston, MA, USA.ORCID 0000-0002-5660-0246

Funding

Traits on trees: Population genomics for understanding complex phenotypesR35GM137758 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Michael Donald Edge · 2020 to 2026
$2.5M
From cell-to-cell heterogeneity to collective behaviors in bacterial biofilmsR35GM142584 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI LARKIN, JOSEPH W · 2021 to 2025
$2.1M
NIGMS NIH HHS R35 GM137758NIGMS NIH HHS R35 GM142584
6 · The paper itself

Abstract

Microbes of nearly every species can form biofilms, communities of cells bound together by a self-produced matrix. It is not understood how variation at the cellular level impacts putatively beneficial, colony-level behaviors, such as cell-to-cell signaling. Here we investigate this problem with an agent-based computational model of metabolically driven electrochemical signaling in

Identifiers

PMID39763919
PMCPMC11702635

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.