Evidence map›Paper›PMID 39763805›Full record

ArticlebioRxiv : the preprint server for biology2024

Glycan analysis probes inspired by human lectins for investigating host-microbe crosstalk.

Soumi Ghosh, Rajeev Chorghade, Roger C Diehl, Greg J Dodge, Sunhee Bae, Amanda E Dugan, Melanie Halim, Michael G Wuo, Helen Bartlett, Liam Herndon and 2 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Soumi GhoshDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0001-6101-0147
Rajeev ChorghadeDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0001-7162-1419
Roger C DiehlDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0003-3129-5027
Greg J DodgeDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0002-6555-8350
Sunhee BaeDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0002-8913-9476
Amanda E DuganDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0003-3135-8155
Melanie HalimDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.
Michael G WuoDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0001-5001-7538
Helen BartlettDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0009-0006-3102-6192
Liam HerndonDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.
Laura L KiesslingDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0001-6829-1500
Barbara ImperialiDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0002-5749-7869

Funding

Synthetic Ligands for Modulating Immune Cell ResponsesR01AI055258 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI KIESSLING, LAURA L · 2003 to 2024
$7.8M
Development of multifunctional probes for profiling microbial glycansU01CA231079 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI IMPERIALI, BARBARA, KIESSLING, LAURA L · 2018 to 2020
$1.4M
Chemical probes of mycobacterial growth and persistenceF32GM133116 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WUO, MICHAEL G · 2019 to 2021
$195k
Structural and functional characterization of phosphoglycosyl transferases from human pathogensF32GM134576 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI DODGE, GREGORY J · 2019 to 2021
$161k
NCI NIH HHS U01 CA231079NIAID NIH HHS R01 AI055258NIGMS NIH HHS F32 GM133116NIGMS NIH HHS F32 GM134576
6 · The paper itself

Abstract

Human lectins are critical carbohydrate-binding proteins that recognize diverse glycoconjugates from microorganisms and can play a key role in host-microbe interactions. Despite their importance in immune recognition and pathogen binding, the specific glycan ligands and functions of many human lectins remain poorly understood. Using previous proof-of-concept studies on selected lectins as the foundation for this work, we present ten additional glycan analysis probes (GAPs) from a diverse set of human soluble lectins, offering robust tools to investigate glycan-mediated interactions. We describe a protein engineering platform that enables scalable production of GAPs that maintain native-like conformations and oligomerization states, equipped with functional reporter tags for targeted glycan profiling. We demonstrate that the soluble GAP reagents can be used in various applications, including glycan array analysis, mucin-binding assays, tissue staining, and microbe binding in complex populations. These capabilities make GAPs valuable for dissecting interactions relevant to understanding host responses to microbes. The tools can be used to distinguish microbial from mammalian glycans, which is crucial for understanding the cross-target interactions of lectins in a physiological environment where both glycan types exist. GAPs have potential as diagnostic and prognostic tools for detecting glycan alterations in chronic diseases, microbial dysbiosis, and immune-related conditions.

Indexed as

glycan-binding probesglycan microarrayshost-microbe interactionshuman lectinsmicrobial glycans

Identifiers

PMID39763805
PMCPMC11703188

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.