Evidence map›Paper›PMID 39763793›Full record

ArticlebioRxiv : the preprint server for biology2024

Structural and energetic analysis of stabilizing indel mutations.

Yulia M Gutierrez, Gabriel J Rocklin

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yulia M GutierrezDepartment of Pharmacology, Northwestern University Feinberg School of Medicine, Chicago, IL.ORCID 0009-0000-8332-7401
Gabriel J RocklinDepartment of Pharmacology, Northwestern University Feinberg School of Medicine, Chicago, IL.ORCID 0000-0003-2253-5631

Funding

High-throughput discovery of protein energy landscapes in natural and designed proteomesDP2GM140927 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Gabriel Jacob Rocklin · 2020 to 2026
$2.4M
NIGMS NIH HHS DP2 GM140927
6 · The paper itself

Abstract

Amino acid insertions and deletions (indels) are among the most common protein mutations and necessitate changes to a protein's backbone geometry. Examining how indels affect protein folding stability (and especially how indels can increase stability) can help reveal the role of backbone energetics on stability and introduce new protein engineering strategies. Tsuboyama et al. measured folding stability for 57,698 single amino acid insertion or deletion mutants in 405 small domains, and this analysis identified 103 stabilizing mutants (ΔΔG

Identifiers

PMID39763793
PMCPMC11702688

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.