Evidence map›Paper›PMID 39763672›Full record

ArticleFrontiers in immunology2024

New insights into roles of IL-7R gene as a diagnostic biomarker for post-stroke depression.

Mengyu Liu, Haochen Sun, Qun Yao, Duohao Wang, Jihong Zhang, Xing Ye, Xinyang Qi

Erratum issuedAbstract read
In one paragraph

Article in Frontiers in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Mengyu Liu *Department of Neurology, Affiliated Nanjing Brain Hospital, Nanjing Medical University, Nanjing, China.
Haochen Sun *Department of Neurology, Affiliated Nanjing Brain Hospital, Nanjing Medical University, Nanjing, China.
Qun Yao *Department of Neurology, Affiliated Nanjing Brain Hospital, Nanjing Medical University, Nanjing, China.
Duohao WangDepartment of Neurology, Affiliated Nanjing Brain Hospital, Nanjing Medical University, Nanjing, China.
Jihong ZhangDepartment of Neurology, Affiliated Nanjing Brain Hospital, Nanjing Medical University, Nanjing, China.
Xing YeDepartment of Neurology, Affiliated Nanjing Brain Hospital, Nanjing Medical University, Nanjing, China.
Xinyang QiDepartment of Neurology, Affiliated Nanjing Brain Hospital, Nanjing Medical University, Nanjing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Post-stroke depression (PSD) is the most prevalent neuropsychiatric complication following a stroke. The inflammatory theory suggests that PSD may be associated with an overactive inflammatory response. However, research findings regarding inflammation-related indicators in PSD remain inconsistent and elusive. This study aimed to screen the diagnostic markers that helps to distinguish between PSD and post-stroke non-depressed (PSND) patients. Methods: Two GEO datasets, including patients with major depression disease (MDD) and controls (CON, GSE98793), ischemic stroke (IS) and CON (GSE16561), were used to analyzed differentially expressed genes (DEGs) and perform enrichment analysis. Protein-protein interaction (PPI) network and Random Forest analysis were used to screen the candidate hub genes. CIBERSORT was performed to analyze the immune infiltration. We analyzed the proteins that interact with the hub genes using string database, circRNA-miRNA-mRNA ceRNA network of the hub genes using RNAInter, miRWalk, miRDB and Starbase databases, and the drugs that regulate the hub genes by DSigDB database. We further verified the expression of the hub genes using Quantitative Real-Time PCR from the blood of patients and CON. Results: From the screened 394 DEGs, the DEGs were found primarily related to activation of immune response. PPI network and random forest analysis obtained the hub genes: IL-7R. ROC analysis showed that IL-7R had a good diagnostic and predictive effect on MDD and IS patients. The proportions of macrophages M0 and monocytes in patients were significantly higher than those in CON. We constructed PPI network and ceRNA network that related to IL-7R. The perturbagen signatures and computational drug signatures were found that can target IL-7R. The expression of IL-7R in MDD, PSND and PSD patients was lower than that in CON, and the expression of IL-7R in PSD patients was lower than that in PSND patients. Conclusion: These findings indicate that IL-7R may serve as a diagnostic marker to distinguish between PSD and PSND patients, and targeting IL-7R as a therapeutic target could potentially improve treatment outcomes for PSD.

Indexed as

BiomarkersProtein Interaction MapsReceptors, Interleukin-7StrokeComputational BiologyDatabases, GeneticDepressionFemaleGene Expression ProfilingGene Regulatory NetworksHumansInterleukin-7 Receptor alpha SubunitMajor Depressive DisorderMaleMiddle AgedBiomarkersIL7R protein, humanInterleukin-7 Receptor alpha SubunitReceptors, Interleukin-7IL-7Rmajor depressionneuroinflammationpost-stroke depressionstroke

Identifiers

PMID39763672
PMCPMC11700794

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.