Evidence map›Paper›PMID 39763491›Full record

Article3 Biotech2025

A novel DNA damage-related gene index for predicting prognosis in gastric cancer.

Haipeng Xiao, Qianjin He, Yang Hu, Chang Li, Han Tian, Feng Chen, Wenchong Song

Abstract read
In one paragraph

Article in 3 Biotech, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Haipeng Xiao *Department of General Surgery, Huanggang Central Hospital of Yangtze University, Huanggang, China.
Qianjin He *Department of Hepatobiliary Surgery/Hernia Surgical Ward, Huanggang Central Hospital of Yangtze University, No.6 Qi 'an Avenue, Huangzhou District, Huanggang, 438000 Hubei China.
Yang Hu *State Key Laboratory of New Targets Discovery and Drug Development for Major Diseases, Gannan Innovation and Translational Medicine Research Institute, Gannan Medical University, Ganzhou, 341000 China.
Chang LiDepartment of Cardiology, Renmin Hospital of Wuhan University, Wuhan, China.
Han TianDepartment of Cardiology, Renmin Hospital of Wuhan University, Wuhan, China.
Feng ChenDepartment of Hepatobiliary Surgery/Hernia Surgical Ward, Huanggang Central Hospital of Yangtze University, No.6 Qi 'an Avenue, Huangzhou District, Huanggang, 438000 Hubei China.
Wenchong SongDepartment of Gastroenterology, Huanggang Central Hospital of Yangtze University, No.6 Qi 'an Avenue, Huangzhou District, Huanggang, 438000 Hubei China.ORCID 0009-0008-2344-2318

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gastric cancer is one of the major cancers with high cancer mortality and shows significant heterogeneity. The development of precise prognostic models is crucial for advancing treatment strategies. Recognizing the pivotal role of DNA damage in tumor progression, we conducted a consensus clustering analysis of DNA damage-related genes to categorize gastric cancer patients from the TCGA clinical cohort into distinct subtypes. Prognostic models were then constructed utilizing machine learning algorithms following Cox regression with differentially expressed genes. Validation was performed using the GSE gastric cancer cohort. Additionally, we investigated other characteristic responses of patients through gene mapping and drug sensitivity analysis. This study 12 differentially prognostic signature genes between the 2 DNA damage subtypes identified were used to calculate risk scores for the patients. This score predicts the prognosis of patients with gastric cancer and their overall survival time. Higher risk scores mean less drug sensitivity, lower survival, and possibly a poorer response to immunotherapy. Our findings provide the basis for future studies targeting DNA damage and its immune microenvironment to improve prognosis and response to immunotherapy.

Indexed as

DNA damageGastric cancerMachine learningPrognostic modelsRisk score

Identifiers

PMID39763491
PMCPMC11700079

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.