Evidence map›Paper›PMID 39761554›Full record

ArticleJournal of medical Internet research2025

Two-Layer Retrieval-Augmented Generation Framework for Low-Resource Medical Question Answering Using Reddit Data: Proof-of-Concept Study.

Sudeshna Das, Yao Ge, Yuting Guo, Swati Rajwal, JaMor Hairston, Jeanne Powell, Drew Walker, Snigdha Peddireddy, Sahithi Lakamana, Selen Bozkurt and 12 more

Abstract read
In one paragraph

Article in Journal of medical Internet research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Sudeshna Das *Department of Biomedical Informatics, School of Medicine, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0002-2112-6986
Yao Ge *Department of Biomedical Informatics, School of Medicine, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0002-3323-7130
Yuting GuoDepartment of Biomedical Informatics, School of Medicine, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0002-8919-0888
Swati RajwalDepartment of Computer Science and Informatics, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0002-3826-5069
JaMor HairstonDepartment of Biomedical Informatics, School of Medicine, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0001-6069-5869
Jeanne PowellDepartment of Biomedical Informatics, School of Medicine, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0002-3494-2376
Drew WalkerDepartment of Biomedical Informatics, School of Medicine, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0002-4216-2396
Snigdha PeddireddyDepartment of Behavioral, Social & Health Education Sciences, Rollins School of Public Health, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0002-2972-1122
Sahithi LakamanaDepartment of Biomedical Informatics, School of Medicine, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0003-1304-7484
Selen BozkurtDepartment of Biomedical Informatics, School of Medicine, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0003-1234-2158
Matthew ReynaDepartment of Biomedical Informatics, School of Medicine, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0003-4688-7965
Reza SameniDepartment of Biomedical Informatics, School of Medicine, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0003-4913-6825
Yunyu XiaoDepartment of Population Health Sciences, Weill Cornell Medicine, New York, NY, United States.ORCID https://orcid.org/0000-0002-0479-1781
Sangmi KimNell Hodgson Woodruff School of Nursing, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0002-1761-4696
Rasheeta ChandlerNell Hodgson Woodruff School of Nursing, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0003-2021-6346
Natalie HernandezCenter for Maternal Health Equity, Morehouse School of Medicine, Atlanta, GA, United States.ORCID https://orcid.org/0000-0001-8911-6613
Danielle MoweryDepartment of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States.ORCID https://orcid.org/0000-0003-3802-4457
Rachel WightmanDepartment of Emergency Medicine, Warren Alpert Medical School of Brown University, Providence, RI, United States.ORCID https://orcid.org/0000-0001-6141-1776
Jennifer LoveDepartment of Emergency Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, United States.ORCID https://orcid.org/0000-0002-5882-4390
Anthony SpadaroDepartment of Emergency Medicine, Rutgers New Jersey Medical School, Newark, NJ, United States.ORCID https://orcid.org/0000-0002-0941-4651
Jeanmarie PerroneDepartment of Emergency Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, United States.ORCID https://orcid.org/0000-0001-7073-9060
Abeed SarkerDepartment of Biomedical Informatics, School of Medicine, Emory University, Atlanta, GA, United States.ORCID https://orcid.org/0000-0001-7358-544X

Funding

Mining Social Media Big Data for Toxicovigilance: Studying Substance Use via Natural Language Processing and Machine Learning MethodsR01DA057599 · NIDA · EMORY UNIVERSITY · PI Abeed H Sarker · 2022 to 2026
$2.2M
NIDA NIH HHS R01 DA057599
6 · The paper itself

Abstract

backgroundThe increasing use of social media to share lived and living experiences of substance use presents a unique opportunity to obtain information on side effects, use patterns, and opinions on novel psychoactive substances. However, due to the large volume of data, obtaining useful insights through natural language processing technologies such as large language models is challenging.

objectiveThis paper aims to develop a retrieval-augmented generation (RAG) architecture for medical question answering pertaining to clinicians' queries on emerging issues associated with health-related topics, using user-generated medical information on social media.

methodsWe proposed a two-layer RAG framework for query-focused answer generation and evaluated a proof of concept for the framework in the context of query-focused summary generation from social media forums, focusing on emerging drug-related information. Our modular framework generates individual summaries followed by an aggregated summary to answer medical queries from large amounts of user-generated social media data in an efficient manner. We compared the performance of a quantized large language model (Nous-Hermes-2-7B-DPO), deployable in low-resource settings, with GPT-4. For this proof-of-concept study, we used user-generated data from Reddit to answer clinicians' questions on the use of xylazine and ketamine.

resultsOur framework achieves comparable median scores in terms of relevance, length, hallucination, coverage, and coherence when evaluated using GPT-4 and Nous-Hermes-2-7B-DPO, evaluated for 20 queries with 76 samples. There was no statistically significant difference between GPT-4 and Nous-Hermes-2-7B-DPO for coverage (Mann-Whitney U=733.0; n

conclusionsOur RAG framework can effectively answer medical questions about targeted topics and can be deployed in resource-constrained settings.

Indexed as

Natural Language ProcessingProof of Concept StudySocial MediaHumansInformation Storage and Retrievalartificial intelligenceGPTlarge language modelsnatural language processingpsychoactive substanceretrieval-augmented generationsocial mediasubstance use

Identifiers

PMID39761554
PMCPMC11747534

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.